The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema

The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. The Research Collaboratory for Structural Bioinformatics (RCSB) has completely redesigned its resource for the distribution and query of 3D structure data. The re-e...

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Detalles Bibliográficos
Autores principales: Deshpande, Nita, Addess, Kenneth J., Bluhm, Wolfgang F., Merino-Ott, Jeffrey C., Townsend-Merino, Wayne, Zhang, Qing, Knezevich, Charlie, Xie, Lie, Chen, Li, Feng, Zukang, Kramer Green, Rachel, Flippen-Anderson, Judith L., Westbrook, John, Berman, Helen M., Bourne, Philip E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540011/
https://www.ncbi.nlm.nih.gov/pubmed/15608185
http://dx.doi.org/10.1093/nar/gki057
Descripción
Sumario:The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. The Research Collaboratory for Structural Bioinformatics (RCSB) has completely redesigned its resource for the distribution and query of 3D structure data. The re-engineered site is currently in public beta test at http://pdbbeta.rcsb.org. The new site expands the functionality of the existing site by providing structure data in greater detail and uniformity, improved query and enhanced analysis tools. A new key feature is the integration and searchability of data from over 20 other sources covering genomic, proteomic and disease relationships. The current capabilities of the re-engineered site, which will become the RCSB production site at http://www.pdb.org in late 2005, are described.

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