Cargando…

High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis

The Brucella melitensis methionyl-tRNA-synthetase (MetRSBm) is a promising target for brucellosis drug development. The virtual screening of large libraries of a drug like molecules against a protein target is a common strategy used to identify novel inhibitors. A High throughput virtual screening w...

Descripción completa

Detalles Bibliográficos
Autores principales: Kumari, Madhulata, Chandra, Subhash, Tiwari, Neeraj, Subbarao, Naidu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405087/
https://www.ncbi.nlm.nih.gov/pubmed/28479744
http://dx.doi.org/10.6026/97320630013008
_version_ 1783231699506692096
author Kumari, Madhulata
Chandra, Subhash
Tiwari, Neeraj
Subbarao, Naidu
author_facet Kumari, Madhulata
Chandra, Subhash
Tiwari, Neeraj
Subbarao, Naidu
author_sort Kumari, Madhulata
collection PubMed
description The Brucella melitensis methionyl-tRNA-synthetase (MetRSBm) is a promising target for brucellosis drug development. The virtual screening of large libraries of a drug like molecules against a protein target is a common strategy used to identify novel inhibitors. A High throughput virtual screening was performed to identify hits to the potential antibrucellosis drug target, MetRSBm. The best inhibitor identified from the literature survey was 1312, 1415, and 1430. In the virtual screening 56,400 compounds of ChEMBL antimycobacterial library, 1596 approved drugs, 419 Natural product IV library, and 2396 methionine analogous were docked and rescoring, identified top 10 ranked compounds as anti-mycobacterial leads showing G-scores -10.27 to -8.42 (in kcal/mol), approved drugs G-scores -9.08 to -6.60 (in kcal/mol), Natural product IV library G-scores -10.55 to -6.02 (in kcal/mol), methionine analogous Gscores -11.20 to -8.51 (in kcal/mol), and compared with all three known inhibitors (as control) G-scores -3.88 to -3.17 (in kcal/mol). This result indicates these novel compounds have the best binding affinity for MetRSBm. In this study, we extrapolate that the analogous of methionine for find novel drug likeness has been identified [4-(L-histidyl)-2-phenylbenzoyl] methionine hydrochloride, might show the inhibitor of Brucella melitensis effect by interacting with MetRS enzyme. We suggests that Prumycin as a natural product is the novel drugs for brucellosis.
format Online
Article
Text
id pubmed-5405087
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-54050872017-05-05 High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis Kumari, Madhulata Chandra, Subhash Tiwari, Neeraj Subbarao, Naidu Bioinformation Hypothesis The Brucella melitensis methionyl-tRNA-synthetase (MetRSBm) is a promising target for brucellosis drug development. The virtual screening of large libraries of a drug like molecules against a protein target is a common strategy used to identify novel inhibitors. A High throughput virtual screening was performed to identify hits to the potential antibrucellosis drug target, MetRSBm. The best inhibitor identified from the literature survey was 1312, 1415, and 1430. In the virtual screening 56,400 compounds of ChEMBL antimycobacterial library, 1596 approved drugs, 419 Natural product IV library, and 2396 methionine analogous were docked and rescoring, identified top 10 ranked compounds as anti-mycobacterial leads showing G-scores -10.27 to -8.42 (in kcal/mol), approved drugs G-scores -9.08 to -6.60 (in kcal/mol), Natural product IV library G-scores -10.55 to -6.02 (in kcal/mol), methionine analogous Gscores -11.20 to -8.51 (in kcal/mol), and compared with all three known inhibitors (as control) G-scores -3.88 to -3.17 (in kcal/mol). This result indicates these novel compounds have the best binding affinity for MetRSBm. In this study, we extrapolate that the analogous of methionine for find novel drug likeness has been identified [4-(L-histidyl)-2-phenylbenzoyl] methionine hydrochloride, might show the inhibitor of Brucella melitensis effect by interacting with MetRS enzyme. We suggests that Prumycin as a natural product is the novel drugs for brucellosis. Biomedical Informatics 2017-01-20 /pmc/articles/PMC5405087/ /pubmed/28479744 http://dx.doi.org/10.6026/97320630013008 Text en © 2017 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Kumari, Madhulata
Chandra, Subhash
Tiwari, Neeraj
Subbarao, Naidu
High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title_full High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title_fullStr High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title_full_unstemmed High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title_short High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis
title_sort high throughput virtual screening to identify novel natural product inhibitors for methionyltrna-synthetase of brucella melitensis
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405087/
https://www.ncbi.nlm.nih.gov/pubmed/28479744
http://dx.doi.org/10.6026/97320630013008
work_keys_str_mv AT kumarimadhulata highthroughputvirtualscreeningtoidentifynovelnaturalproductinhibitorsformethionyltrnasynthetaseofbrucellamelitensis
AT chandrasubhash highthroughputvirtualscreeningtoidentifynovelnaturalproductinhibitorsformethionyltrnasynthetaseofbrucellamelitensis
AT tiwarineeraj highthroughputvirtualscreeningtoidentifynovelnaturalproductinhibitorsformethionyltrnasynthetaseofbrucellamelitensis
AT subbaraonaidu highthroughputvirtualscreeningtoidentifynovelnaturalproductinhibitorsformethionyltrnasynthetaseofbrucellamelitensis