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Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution

Tetrastigma (Miq.) Planch. is one of the most species-rich genera of the economically and agronomically important grape family Vitaceae. It includes ca. 95 species widely distributed in the tropics and subtropics of Asia and Australia. Species of Tetrastigma exhibit great diversity in both vegetativ...

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Autores principales: Habib, Sadaf, Dang, Viet-Cuong, Ickert-Bond, Stefanie M., Zhang, Jin-Long, Lu, Li-Min, Wen, Jun, Chen, Zhi-Duan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405133/
https://www.ncbi.nlm.nih.gov/pubmed/28491066
http://dx.doi.org/10.3389/fpls.2017.00590
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author Habib, Sadaf
Dang, Viet-Cuong
Ickert-Bond, Stefanie M.
Zhang, Jin-Long
Lu, Li-Min
Wen, Jun
Chen, Zhi-Duan
author_facet Habib, Sadaf
Dang, Viet-Cuong
Ickert-Bond, Stefanie M.
Zhang, Jin-Long
Lu, Li-Min
Wen, Jun
Chen, Zhi-Duan
author_sort Habib, Sadaf
collection PubMed
description Tetrastigma (Miq.) Planch. is one of the most species-rich genera of the economically and agronomically important grape family Vitaceae. It includes ca. 95 species widely distributed in the tropics and subtropics of Asia and Australia. Species of Tetrastigma exhibit great diversity in both vegetative and reproductive characters. Here we inferred a well-supported phylogeny of Tetrastigma based on ten chloroplast DNA regions with an expanded taxon sampling of 72 species and two varieties. Our molecular results support six major clades within Tetrastigma and the relationships among these clades were well-resolved. We also documented seed morphology of 44 species covering the six major clades of the genus. Ancestral states of eight characters (seed shape, seed surface rumination pattern, chalaza length/width ratio, chalaza position, ventral infold position, ventral infold divergence, ventral infold depth in cross section, and endosperm shape) were reconstructed in Mesquite and R with four models. Character optimizations suggest that all character states have evolved multiple times except that the irregular-shaped surface rumination has derived only once in Tetrastigma. We evaluated the taxonomic importance of seed morphology and identified potential morphological evidence to support each major clade. Our comprehensive analyses of Tetrastigma shed insights into the infrageneric classification of this morphologically diverse and ecologically important genus in tropical and subtropical Asia.
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spelling pubmed-54051332017-05-10 Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution Habib, Sadaf Dang, Viet-Cuong Ickert-Bond, Stefanie M. Zhang, Jin-Long Lu, Li-Min Wen, Jun Chen, Zhi-Duan Front Plant Sci Plant Science Tetrastigma (Miq.) Planch. is one of the most species-rich genera of the economically and agronomically important grape family Vitaceae. It includes ca. 95 species widely distributed in the tropics and subtropics of Asia and Australia. Species of Tetrastigma exhibit great diversity in both vegetative and reproductive characters. Here we inferred a well-supported phylogeny of Tetrastigma based on ten chloroplast DNA regions with an expanded taxon sampling of 72 species and two varieties. Our molecular results support six major clades within Tetrastigma and the relationships among these clades were well-resolved. We also documented seed morphology of 44 species covering the six major clades of the genus. Ancestral states of eight characters (seed shape, seed surface rumination pattern, chalaza length/width ratio, chalaza position, ventral infold position, ventral infold divergence, ventral infold depth in cross section, and endosperm shape) were reconstructed in Mesquite and R with four models. Character optimizations suggest that all character states have evolved multiple times except that the irregular-shaped surface rumination has derived only once in Tetrastigma. We evaluated the taxonomic importance of seed morphology and identified potential morphological evidence to support each major clade. Our comprehensive analyses of Tetrastigma shed insights into the infrageneric classification of this morphologically diverse and ecologically important genus in tropical and subtropical Asia. Frontiers Media S.A. 2017-04-26 /pmc/articles/PMC5405133/ /pubmed/28491066 http://dx.doi.org/10.3389/fpls.2017.00590 Text en Copyright © 2017 Habib, Dang, Ickert-Bond, Zhang, Lu, Wen and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Habib, Sadaf
Dang, Viet-Cuong
Ickert-Bond, Stefanie M.
Zhang, Jin-Long
Lu, Li-Min
Wen, Jun
Chen, Zhi-Duan
Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title_full Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title_fullStr Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title_full_unstemmed Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title_short Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
title_sort robust phylogeny of tetrastigma (vitaceae) based on ten plastid dna regions: implications for infrageneric classification and seed character evolution
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405133/
https://www.ncbi.nlm.nih.gov/pubmed/28491066
http://dx.doi.org/10.3389/fpls.2017.00590
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