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myGenomeBrowser: building and sharing your own genome browser
myGenomeBrowser is a web-based environment that provides biologists with a way to build, query and share their genome browsers. This tool, that builds on JBrowse, is designed to give users more autonomy while simplifying and minimizing intervention from system administrators. We have extended genome...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408841/ https://www.ncbi.nlm.nih.gov/pubmed/28011789 http://dx.doi.org/10.1093/bioinformatics/btw800 |
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author | Carrere, Sébastien Gouzy, Jérôme |
author_facet | Carrere, Sébastien Gouzy, Jérôme |
author_sort | Carrere, Sébastien |
collection | PubMed |
description | myGenomeBrowser is a web-based environment that provides biologists with a way to build, query and share their genome browsers. This tool, that builds on JBrowse, is designed to give users more autonomy while simplifying and minimizing intervention from system administrators. We have extended genome browser basic features to allow users to query, analyze and share their data. Availability and implementation: myGenomeBrowser is freely available at https://bbric-pipelines.toulouse.inra.fr/myGenomeBrowser and includes tutorial screencasts. Source code and installation instructions can be found at https://framagit.org/BBRIC/myGenomeBrowser. myGenomeBrowser is open-source and mainly implemented in Perl, JavaScript, Apache and Docker. |
format | Online Article Text |
id | pubmed-5408841 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-54088412017-05-03 myGenomeBrowser: building and sharing your own genome browser Carrere, Sébastien Gouzy, Jérôme Bioinformatics Applications Notes myGenomeBrowser is a web-based environment that provides biologists with a way to build, query and share their genome browsers. This tool, that builds on JBrowse, is designed to give users more autonomy while simplifying and minimizing intervention from system administrators. We have extended genome browser basic features to allow users to query, analyze and share their data. Availability and implementation: myGenomeBrowser is freely available at https://bbric-pipelines.toulouse.inra.fr/myGenomeBrowser and includes tutorial screencasts. Source code and installation instructions can be found at https://framagit.org/BBRIC/myGenomeBrowser. myGenomeBrowser is open-source and mainly implemented in Perl, JavaScript, Apache and Docker. Oxford University Press 2017-04-15 2017-01-17 /pmc/articles/PMC5408841/ /pubmed/28011789 http://dx.doi.org/10.1093/bioinformatics/btw800 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Carrere, Sébastien Gouzy, Jérôme myGenomeBrowser: building and sharing your own genome browser |
title | myGenomeBrowser: building and sharing your own genome browser |
title_full | myGenomeBrowser: building and sharing your own genome browser |
title_fullStr | myGenomeBrowser: building and sharing your own genome browser |
title_full_unstemmed | myGenomeBrowser: building and sharing your own genome browser |
title_short | myGenomeBrowser: building and sharing your own genome browser |
title_sort | mygenomebrowser: building and sharing your own genome browser |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408841/ https://www.ncbi.nlm.nih.gov/pubmed/28011789 http://dx.doi.org/10.1093/bioinformatics/btw800 |
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