Cargando…
Fast and accurate phylogeny reconstruction using filtered spaced-word matches
MOTIVATION: Word-based or ‘alignment-free’ algorithms are increasingly used for phylogeny reconstruction and genome comparison, since they are much faster than traditional approaches that are based on full sequence alignments. Existing alignment-free programs, however, are less accurate than alignme...
Autores principales: | Leimeister, Chris-André, Sohrabi-Jahromi, Salma, Morgenstern, Burkhard |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5409309/ https://www.ncbi.nlm.nih.gov/pubmed/28073754 http://dx.doi.org/10.1093/bioinformatics/btw776 |
Ejemplares similares
-
Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points
por: Leimeister, Chris-André, et al.
Publicado: (2019) -
‘Multi-SpaM’: a maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees
por: Dencker, Thomas, et al.
Publicado: (2019) -
Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches
por: Horwege, Sebastian, et al.
Publicado: (2014) -
Fast alignment-free sequence comparison using spaced-word frequencies
por: Leimeister, Chris-Andre, et al.
Publicado: (2014) -
Estimating evolutionary distances between genomic sequences from spaced-word matches
por: Morgenstern, Burkhard, et al.
Publicado: (2015)