Cargando…

Analysis of the in planta transcriptome expressed by the corn pathogen Pantoea stewartii subsp. stewartii via RNA-Seq

Pantoea stewartii subsp. stewartii is a bacterial phytopathogen that causes Stewart’s wilt disease in corn. It uses quorum sensing to regulate expression of some genes involved in virulence in a cell density-dependent manner as the bacterial population grows from small numbers at the initial infecti...

Descripción completa

Detalles Bibliográficos
Autores principales:	Packard, Holly, Kernell Burke, Alison, Jensen, Roderick V., Stevens, Ann M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2017
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410145/ https://www.ncbi.nlm.nih.gov/pubmed/28462040 http://dx.doi.org/10.7717/peerj.3237

Ejemplares similares

Complete Genome Assembly of Pantoea stewartii subsp. stewartii DC283, a Corn Pathogen
por: Duong, Duy An, et al.
Publicado: (2017)

Pest categorisation of Pantoea stewartii subsp. stewartii
por: Jeger, Michael, et al.
Publicado: (2018)

The Transcription Factor Lrp of Pantoea stewartii subsp. stewartii Controls Capsule Production, Motility, and Virulence Important for in planta Growth
por: Bartholomew, Holly P., et al.
Publicado: (2022)

Development of an Immunochromatographic Strip for Rapid Detection of Pantoea stewartii subsp. stewartii
por: Feng, Min, et al.
Publicado: (2015)

Analyzing the Transcriptomes of Two Quorum-Sensing Controlled Transcription Factors, RcsA and LrhA, Important for Pantoea stewartii Virulence
por: Kernell Burke, Alison, et al.
Publicado: (2015)

Risk assessment of the entry of Pantoea stewartii subsp. stewartii on maize seed imported by the EU from the USA
por: Bragard, Claude, et al.
Publicado: (2019)

Analysis of Italian isolates of Pantoea stewartii subsp. stewartii and development of a real-time PCR-based diagnostic method
por: Scala, Valeria, et al.
Publicado: (2023)

Genetic diversity of Pantoea stewartii subspecies stewartii causing jackfruit-bronzing disease in Malaysia
por: Abidin, Nuraizat, et al.
Publicado: (2020)

Integrated downstream regulation by the quorum-sensing controlled transcription factors LrhA and RcsA impacts phenotypic outputs associated with virulence in the phytopathogen Pantoea stewartii subsp. stewartii
por: Duong, Duy An, et al.
Publicado: (2017)

Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia
por: Ibrahim, Rohaya, et al.
Publicado: (2020)

Pan-Genome of Novel Pantoea stewartii subsp. indologenes Reveals Genes Involved in Onion Pathogenicity and Evidence of Lateral Gene Transfer
por: Agarwal, Gaurav, et al.
Publicado: (2021)

Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii
por: De Maayer, Pieter, et al.
Publicado: (2017)

Multiple Biosynthetic Gene Pathways are Revealed in Whole-Genome Sequence of Endophytic Biocontrol Strain Pantoea stewartii subsp. indologenes ST25
por: Khanal, Sabin, et al.
Publicado: (2023)

Understanding the Quorum-Sensing Bacterium Pantoea stewartii Strain M009 with Whole-Genome Sequencing Analysis
por: Tan, Wen-Si, et al.
Publicado: (2015)

Analysis of Quorum-Sensing Pantoea stewartii Strain M073a through Whole-Genome Sequencing
por: Mohamad, Nur Izzati, et al.
Publicado: (2015)

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
por: Irmscher, Tobias, et al.
Publicado: (2021)

Biogenic Synthesis of Silver Nanoparticles Using Pantoea stewartii and Priestia aryabhattai and Their Antimicrobial, Larvicidal, Histopathological, and Biotoxicity Potential
por: Wilson, Jeyaraj John, et al.
Publicado: (2023)

The sequence and de novo assembly of Oxygymnocypris stewartii genome
por: Liu, Hai-Ping, et al.
Publicado: (2019)

Complete Genome Sequence of Pantoea stewartii RON18713 from Brazil Nut Tree Phyllosphere Reveals Genes Involved in Plant Growth Promotion
por: Rocha, Rodrigo Theodoro, et al.
Publicado: (2023)

A discovery down under: decoding the draft genome sequence of Pantoea stewartii from Australia’s Critically Endangered western ground parrot/kyloring (Pezoporus flaviventris)
por: White, Rhys T., et al.
Publicado: (2023)

Evaluation of Safety of Stewart’s Wood Fern (Dryopteris stewartii) and Its Anti-Hyperglycemic Potential in Alloxan-Induced Diabetic Mice
por: Hanif, Uzma, et al.
Publicado: (2022)

Anti-Diabetic and Cytotoxic Evaluation of Phlomis stewartii Plant Phytochemicals on Cigarette Smoke Inhalation and Alloxan-Induced Diabetes in Wistar Rats
por: Rasheed, Mamoon Ur, et al.
Publicado: (2022)

The synergistic effect of concatenation in phylogenomics: the case in Pantoea
por: Palmer, Marike, et al.
Publicado: (2019)

Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data
por: Ahmed, Mahmoud, et al.
Publicado: (2023)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
por: Burke, Catherine M., et al.
Publicado: (2016)

Transcriptome profiling by RNA-Seq reveals differentially expressed genes related to fruit development and ripening characteristics in strawberries (Fragaria × ananassa)
por: Hu, Panpan, et al.
Publicado: (2018)

Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics
por: Alvarenga, Danillo O., et al.
Publicado: (2020)

RNA sequencing (RNA-Seq) of lymph node, spleen, and thymus transcriptome from wild Peninsular Malaysian cynomolgus macaque (Macaca fascicularis)
por: Ee Uli, Joey, et al.
Publicado: (2017)

Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
por: Golosova, Olga, et al.
Publicado: (2014)

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
por: Dimitrov, Daniel, et al.
Publicado: (2020)

Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL)
por: Kyritsis, Konstantinos A., et al.
Publicado: (2023)

Integrated mRNA-seq and miRNA-seq analysis of goat fibroblasts response to Brucella Melitensis strain M5-90
por: Li, Baobao, et al.
Publicado: (2021)

3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism
por: McClure, Ryan S., et al.
Publicado: (2023)

Getting the most out of RNA-seq data analysis
por: Khang, Tsung Fei, et al.
Publicado: (2015)

High-performance pipeline for MutMap and QTL-seq
por: Sugihara, Yu, et al.
Publicado: (2022)

Integration of exome-seq and mRNA-seq using DawnRank, identified genes involved in innate immunity as drivers of breast cancer in the Indian cohort
por: Nirgude, Snehal, et al.
Publicado: (2023)

Transcriptome profiling of avian pathogenic Escherichia coli and the mouse microvascular endothelial cell line bEnd.3 during interaction
por: Wang, Peili, et al.
Publicado: (2020)

Power analysis and sample size estimation for RNA-Seq differential expression
por: Ching, Travers, et al.
Publicado: (2014)

CLIPSeqTools—a novel bioinformatics CLIP-seq analysis suite
por: Maragkakis, Manolis, et al.
Publicado: (2016)

voomDDA: discovery of diagnostic biomarkers and classification of RNA-seq data
por: Zararsiz, Gokmen, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_0d499vsq3t83kreqb6co40f6bf