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Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape
Phylogenetic trees are the de facto standard for visualizing evolutionary relationships, but large trees can be difficult to interpret because they require a high cognitive load to identify relationships between multiple operational taxonomic units (OTUs). We present a new tool for displaying phylog...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411050/ https://www.ncbi.nlm.nih.gov/pubmed/28459802 http://dx.doi.org/10.1371/journal.pone.0175895 |
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author | Waese, Jamie Provart, Nicholas J. Guttman, David S. |
author_facet | Waese, Jamie Provart, Nicholas J. Guttman, David S. |
author_sort | Waese, Jamie |
collection | PubMed |
description | Phylogenetic trees are the de facto standard for visualizing evolutionary relationships, but large trees can be difficult to interpret because they require a high cognitive load to identify relationships between multiple operational taxonomic units (OTUs). We present a new tool for displaying phylogenetic relationships as a topographic map in which OTUs autonomously attract or repel one another based on their individual branch lengths and distance to a common ancestor. This data visualization paradigm makes it possible to preattentively identify the nature of the relationship between items without having to trace a complex network of branches back to the root. This tool was developed for exploring phylogenetic data, but the technique could be extended for visualizing other hierarchical structures as well. |
format | Online Article Text |
id | pubmed-5411050 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54110502017-05-12 Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape Waese, Jamie Provart, Nicholas J. Guttman, David S. PLoS One Research Article Phylogenetic trees are the de facto standard for visualizing evolutionary relationships, but large trees can be difficult to interpret because they require a high cognitive load to identify relationships between multiple operational taxonomic units (OTUs). We present a new tool for displaying phylogenetic relationships as a topographic map in which OTUs autonomously attract or repel one another based on their individual branch lengths and distance to a common ancestor. This data visualization paradigm makes it possible to preattentively identify the nature of the relationship between items without having to trace a complex network of branches back to the root. This tool was developed for exploring phylogenetic data, but the technique could be extended for visualizing other hierarchical structures as well. Public Library of Science 2017-05-01 /pmc/articles/PMC5411050/ /pubmed/28459802 http://dx.doi.org/10.1371/journal.pone.0175895 Text en © 2017 Waese et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Waese, Jamie Provart, Nicholas J. Guttman, David S. Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title | Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title_full | Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title_fullStr | Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title_full_unstemmed | Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title_short | Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape |
title_sort | topo-phylogeny: visualizing evolutionary relationships on a topographic landscape |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411050/ https://www.ncbi.nlm.nih.gov/pubmed/28459802 http://dx.doi.org/10.1371/journal.pone.0175895 |
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