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Sample size calculation to externally validate scoring systems based on logistic regression models

BACKGROUND: A sample size containing at least 100 events and 100 non-events has been suggested to validate a predictive model, regardless of the model being validated and that certain factors can influence calibration of the predictive model (discrimination, parameterization and incidence). Scoring...

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Autores principales: Palazón-Bru, Antonio, Folgado-de la Rosa, David Manuel, Cortés-Castell, Ernesto, López-Cascales, María Teresa, Gil-Guillén, Vicente Francisco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411086/
https://www.ncbi.nlm.nih.gov/pubmed/28459847
http://dx.doi.org/10.1371/journal.pone.0176726
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author Palazón-Bru, Antonio
Folgado-de la Rosa, David Manuel
Cortés-Castell, Ernesto
López-Cascales, María Teresa
Gil-Guillén, Vicente Francisco
author_facet Palazón-Bru, Antonio
Folgado-de la Rosa, David Manuel
Cortés-Castell, Ernesto
López-Cascales, María Teresa
Gil-Guillén, Vicente Francisco
author_sort Palazón-Bru, Antonio
collection PubMed
description BACKGROUND: A sample size containing at least 100 events and 100 non-events has been suggested to validate a predictive model, regardless of the model being validated and that certain factors can influence calibration of the predictive model (discrimination, parameterization and incidence). Scoring systems based on binary logistic regression models are a specific type of predictive model. OBJECTIVE: The aim of this study was to develop an algorithm to determine the sample size for validating a scoring system based on a binary logistic regression model and to apply it to a case study. METHODS: The algorithm was based on bootstrap samples in which the area under the ROC curve, the observed event probabilities through smooth curves, and a measure to determine the lack of calibration (estimated calibration index) were calculated. To illustrate its use for interested researchers, the algorithm was applied to a scoring system, based on a binary logistic regression model, to determine mortality in intensive care units. RESULTS: In the case study provided, the algorithm obtained a sample size with 69 events, which is lower than the value suggested in the literature. CONCLUSION: An algorithm is provided for finding the appropriate sample size to validate scoring systems based on binary logistic regression models. This could be applied to determine the sample size in other similar cases.
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spelling pubmed-54110862017-05-12 Sample size calculation to externally validate scoring systems based on logistic regression models Palazón-Bru, Antonio Folgado-de la Rosa, David Manuel Cortés-Castell, Ernesto López-Cascales, María Teresa Gil-Guillén, Vicente Francisco PLoS One Research Article BACKGROUND: A sample size containing at least 100 events and 100 non-events has been suggested to validate a predictive model, regardless of the model being validated and that certain factors can influence calibration of the predictive model (discrimination, parameterization and incidence). Scoring systems based on binary logistic regression models are a specific type of predictive model. OBJECTIVE: The aim of this study was to develop an algorithm to determine the sample size for validating a scoring system based on a binary logistic regression model and to apply it to a case study. METHODS: The algorithm was based on bootstrap samples in which the area under the ROC curve, the observed event probabilities through smooth curves, and a measure to determine the lack of calibration (estimated calibration index) were calculated. To illustrate its use for interested researchers, the algorithm was applied to a scoring system, based on a binary logistic regression model, to determine mortality in intensive care units. RESULTS: In the case study provided, the algorithm obtained a sample size with 69 events, which is lower than the value suggested in the literature. CONCLUSION: An algorithm is provided for finding the appropriate sample size to validate scoring systems based on binary logistic regression models. This could be applied to determine the sample size in other similar cases. Public Library of Science 2017-05-01 /pmc/articles/PMC5411086/ /pubmed/28459847 http://dx.doi.org/10.1371/journal.pone.0176726 Text en © 2017 Palazón-Bru et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Palazón-Bru, Antonio
Folgado-de la Rosa, David Manuel
Cortés-Castell, Ernesto
López-Cascales, María Teresa
Gil-Guillén, Vicente Francisco
Sample size calculation to externally validate scoring systems based on logistic regression models
title Sample size calculation to externally validate scoring systems based on logistic regression models
title_full Sample size calculation to externally validate scoring systems based on logistic regression models
title_fullStr Sample size calculation to externally validate scoring systems based on logistic regression models
title_full_unstemmed Sample size calculation to externally validate scoring systems based on logistic regression models
title_short Sample size calculation to externally validate scoring systems based on logistic regression models
title_sort sample size calculation to externally validate scoring systems based on logistic regression models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411086/
https://www.ncbi.nlm.nih.gov/pubmed/28459847
http://dx.doi.org/10.1371/journal.pone.0176726
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