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Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5413823/ https://www.ncbi.nlm.nih.gov/pubmed/28170150 http://dx.doi.org/10.1002/cphc.201601325 |
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author | Kubota, Rinko Yamashita, Yusuke Kenmotsu, Takahiro Yoshikawa, Yuko Yoshida, Kenji Watanabe, Yoshiaki Imanaka, Tadayuki Yoshikawa, Kenichi |
author_facet | Kubota, Rinko Yamashita, Yusuke Kenmotsu, Takahiro Yoshikawa, Yuko Yoshida, Kenji Watanabe, Yoshiaki Imanaka, Tadayuki Yoshikawa, Kenichi |
author_sort | Kubota, Rinko |
collection | PubMed |
description | DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs than CW sonication under the same total input ultrasound energy when the pulse repetition period was above the order of a second. In contrast, pulses caused more DSBs than CW sonication for pulse widths shorter than a second. These effect of ultrasound on DNA were interpreted in terms of the time‐dependent decay in the probability of breakage during the duration of a pulse. We propose a simple phenomenological model by considering a characteristic decay in the probability of DSBs during single‐pulse sonication, which reproduces the essence of the experimental trend. In addition, a data analysis revealed a characteristic scaling behavior between the number of pulses and the number of DSBs. |
format | Online Article Text |
id | pubmed-5413823 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54138232017-05-15 Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound Kubota, Rinko Yamashita, Yusuke Kenmotsu, Takahiro Yoshikawa, Yuko Yoshida, Kenji Watanabe, Yoshiaki Imanaka, Tadayuki Yoshikawa, Kenichi Chemphyschem Articles DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs than CW sonication under the same total input ultrasound energy when the pulse repetition period was above the order of a second. In contrast, pulses caused more DSBs than CW sonication for pulse widths shorter than a second. These effect of ultrasound on DNA were interpreted in terms of the time‐dependent decay in the probability of breakage during the duration of a pulse. We propose a simple phenomenological model by considering a characteristic decay in the probability of DSBs during single‐pulse sonication, which reproduces the essence of the experimental trend. In addition, a data analysis revealed a characteristic scaling behavior between the number of pulses and the number of DSBs. John Wiley and Sons Inc. 2017-03-14 2017-04-19 /pmc/articles/PMC5413823/ /pubmed/28170150 http://dx.doi.org/10.1002/cphc.201601325 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Articles Kubota, Rinko Yamashita, Yusuke Kenmotsu, Takahiro Yoshikawa, Yuko Yoshida, Kenji Watanabe, Yoshiaki Imanaka, Tadayuki Yoshikawa, Kenichi Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound |
title | Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
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title_full | Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
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title_fullStr | Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
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title_full_unstemmed | Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
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title_short | Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
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title_sort | double‐strand breaks in genome‐sized dna caused by ultrasound |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5413823/ https://www.ncbi.nlm.nih.gov/pubmed/28170150 http://dx.doi.org/10.1002/cphc.201601325 |
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