Cargando…

Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound

DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs t...

Descripción completa

Detalles Bibliográficos
Autores principales: Kubota, Rinko, Yamashita, Yusuke, Kenmotsu, Takahiro, Yoshikawa, Yuko, Yoshida, Kenji, Watanabe, Yoshiaki, Imanaka, Tadayuki, Yoshikawa, Kenichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5413823/
https://www.ncbi.nlm.nih.gov/pubmed/28170150
http://dx.doi.org/10.1002/cphc.201601325
_version_ 1783233240287412224
author Kubota, Rinko
Yamashita, Yusuke
Kenmotsu, Takahiro
Yoshikawa, Yuko
Yoshida, Kenji
Watanabe, Yoshiaki
Imanaka, Tadayuki
Yoshikawa, Kenichi
author_facet Kubota, Rinko
Yamashita, Yusuke
Kenmotsu, Takahiro
Yoshikawa, Yuko
Yoshida, Kenji
Watanabe, Yoshiaki
Imanaka, Tadayuki
Yoshikawa, Kenichi
author_sort Kubota, Rinko
collection PubMed
description DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs than CW sonication under the same total input ultrasound energy when the pulse repetition period was above the order of a second. In contrast, pulses caused more DSBs than CW sonication for pulse widths shorter than a second. These effect of ultrasound on DNA were interpreted in terms of the time‐dependent decay in the probability of breakage during the duration of a pulse. We propose a simple phenomenological model by considering a characteristic decay in the probability of DSBs during single‐pulse sonication, which reproduces the essence of the experimental trend. In addition, a data analysis revealed a characteristic scaling behavior between the number of pulses and the number of DSBs.
format Online
Article
Text
id pubmed-5413823
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-54138232017-05-15 Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound Kubota, Rinko Yamashita, Yusuke Kenmotsu, Takahiro Yoshikawa, Yuko Yoshida, Kenji Watanabe, Yoshiaki Imanaka, Tadayuki Yoshikawa, Kenichi Chemphyschem Articles DNA double‐strand breaks (DSBs) caused by ultrasound were evaluated in a quantitative manner by single‐molecule fluorescence microscopy. We compared the effect of time‐interval (or pulse) sonication to that of continuous wave (CW) sonication at a fixed frequency of 30 kHz. Pulses caused fewer DSBs than CW sonication under the same total input ultrasound energy when the pulse repetition period was above the order of a second. In contrast, pulses caused more DSBs than CW sonication for pulse widths shorter than a second. These effect of ultrasound on DNA were interpreted in terms of the time‐dependent decay in the probability of breakage during the duration of a pulse. We propose a simple phenomenological model by considering a characteristic decay in the probability of DSBs during single‐pulse sonication, which reproduces the essence of the experimental trend. In addition, a data analysis revealed a characteristic scaling behavior between the number of pulses and the number of DSBs. John Wiley and Sons Inc. 2017-03-14 2017-04-19 /pmc/articles/PMC5413823/ /pubmed/28170150 http://dx.doi.org/10.1002/cphc.201601325 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Articles
Kubota, Rinko
Yamashita, Yusuke
Kenmotsu, Takahiro
Yoshikawa, Yuko
Yoshida, Kenji
Watanabe, Yoshiaki
Imanaka, Tadayuki
Yoshikawa, Kenichi
Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title_full Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title_fullStr Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title_full_unstemmed Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title_short Double‐Strand Breaks in Genome‐Sized DNA Caused by Ultrasound
title_sort double‐strand breaks in genome‐sized dna caused by ultrasound
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5413823/
https://www.ncbi.nlm.nih.gov/pubmed/28170150
http://dx.doi.org/10.1002/cphc.201601325
work_keys_str_mv AT kubotarinko doublestrandbreaksingenomesizeddnacausedbyultrasound
AT yamashitayusuke doublestrandbreaksingenomesizeddnacausedbyultrasound
AT kenmotsutakahiro doublestrandbreaksingenomesizeddnacausedbyultrasound
AT yoshikawayuko doublestrandbreaksingenomesizeddnacausedbyultrasound
AT yoshidakenji doublestrandbreaksingenomesizeddnacausedbyultrasound
AT watanabeyoshiaki doublestrandbreaksingenomesizeddnacausedbyultrasound
AT imanakatadayuki doublestrandbreaksingenomesizeddnacausedbyultrasound
AT yoshikawakenichi doublestrandbreaksingenomesizeddnacausedbyultrasound