Cargando…

Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function

LTR retrotransposons are repetitive DNA elements comprising ∼10% of the human genome. However, LTR sequences are disproportionately present in human long, non-coding RNAs (lncRNAs). Whether and how the LTR lncRNAs serve biological functions are largely unknown. Here we show that in primary human ery...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hu, Tianxiang, Pi, Wenhu, Zhu, Xingguo, Yu, Miao, Ha, Hongseok, Shi, Huidong, Choi, Jeong-Hyeon, Tuan, Dorothy
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Gene regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5416847/ https://www.ncbi.nlm.nih.gov/pubmed/28132025 http://dx.doi.org/10.1093/nar/gkx055

Ejemplares similares

Uracil DNA Glycosylase 2 negatively regulates HIV-1 LTR transcription
por: Fenard, David, et al.
Publicado: (2009)

The diversity of LTR retrotransposons
por: Havecker, Ericka R, et al.
Publicado: (2004)

LTR Retrotransposons in Fungi
por: Muszewska, Anna, et al.
Publicado: (2011)

Distant positioning of proteasomal proteolysis relative to actively transcribed genes
por: Scharf, Andrea, et al.
Publicado: (2011)

Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons
por: Shpiz, Sergey, et al.
Publicado: (2011)

Balancing acts of SRI and an auto-inhibitory domain specify Set2 function at transcribed chromatin
por: Wang, Yi, et al.
Publicado: (2015)

Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data
por: Conti, Anastasia, et al.
Publicado: (2015)

Unexpected diversity in eukaryotic transcription revealed by the retrotransposon hotspot family of Trypanosoma brucei
por: Florini, Francesca, et al.
Publicado: (2019)

Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters
por: Chen, Fuquan, et al.
Publicado: (2020)

DIRS retrotransposons amplify via linear, single-stranded cDNA intermediates
por: Malicki, Marek, et al.
Publicado: (2020)

LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons
por: Ou, Shujun, et al.
Publicado: (2019)

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
por: Rodríguez-Gil, Alfonso, et al.
Publicado: (2010)

Alu retrotransposons promote differentiation of human carcinoma cells through the aryl hydrocarbon receptor
por: Morales-Hernández, Antonio, et al.
Publicado: (2016)

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
por: Xu, Zhao, et al.
Publicado: (2007)

Recruitment of the ATP-dependent chromatin remodeler dMi-2 to the transcribed region of active heat shock genes
por: Mathieu, Eve-Lyne, et al.
Publicado: (2012)

HSP90α plays an important role in piRNA biogenesis and retrotransposon repression in mouse
por: Ichiyanagi, Tomoko, et al.
Publicado: (2014)

Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers
por: Takeuchi, Chikara, et al.
Publicado: (2022)

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation
por: Brind’Amour, Julie, et al.
Publicado: (2018)

De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment
por: Olovnikov, Ivan, et al.
Publicado: (2013)

A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes
por: Baumann, Douglas G., et al.
Publicado: (2017)

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress
por: Servant, Géraldine, et al.
Publicado: (2012)

Impaired function of rDNA transcription initiation machinery leads to derepression of ribosomal genes with insertions of R2 retrotransposon
por: Fefelova, Elena A, et al.
Publicado: (2022)

Cis-regulation of microRNA expression by scaffold/matrix-attachment regions
por: Chavali, Pavithra Lakshminarasimhan, et al.
Publicado: (2011)

A network of cis and trans interactions is required for ParB spreading
por: Song, Dan, et al.
Publicado: (2017)

dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes
por: Lloret-Llinares, Marta, et al.
Publicado: (2012)

PRC2 regulates RNA polymerase III transcribed non-translated RNA gene transcription through EZH2 and SUZ12 interaction with TFIIIC complex
por: Liu, Chang, et al.
Publicado: (2015)

Additional ORFs in Plant LTR-Retrotransposons
por: Vicient, Carlos M., et al.
Publicado: (2020)

Creating and validating cis-regulatory maps of tissue-specific gene expression regulation
por: O'Connor, Timothy R., et al.
Publicado: (2014)

G-quadruplexes as novel cis-elements controlling transcription during embryonic development
por: David, Aldana P., et al.
Publicado: (2016)

Global identification of the genetic networks and cis-regulatory elements of the cold response in zebrafish
por: Hu, Peng, et al.
Publicado: (2015)

Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics
por: Orozco-Arias, Simon, et al.
Publicado: (2018)

Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data
por: Zeigler, Robert D., et al.
Publicado: (2014)

Dichotomous cis-regulatory motifs mediate the maturation of the neuromuscular junction by retrograde BMP signaling
por: Vuilleumier, Robin, et al.
Publicado: (2022)

Genetic context effects can override canonical cis regulatory elements in Escherichia coli
por: Scholz, Scott A, et al.
Publicado: (2022)

Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families
por: Singh, Larry N., et al.
Publicado: (2010)

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements
por: Chatagnon, Amandine, et al.
Publicado: (2015)

Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus
por: Yang, Rui, et al.
Publicado: (2016)

Locally acting transcription factors regulate p53-dependent cis-regulatory element activity
por: Catizone, Allison N, et al.
Publicado: (2020)

Looping of upstream cis-regulatory elements is required for CFTR expression in human airway epithelial cells
por: NandyMazumdar, Monali, et al.
Publicado: (2020)

Cryptic transcripts from a ubiquitous plasmid origin of replication confound tests for cis-regulatory function
por: Lemp, Nathan A., et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_1kniq9ubgueaehlg6hmcsm5hmg