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Subsampling scaling
In real-world applications, observations are often constrained to a small fraction of a system. Such spatial subsampling can be caused by the inaccessibility or the sheer size of the system, and cannot be overcome by longer sampling. Spatial subsampling can strongly bias inferences about a system...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418619/ https://www.ncbi.nlm.nih.gov/pubmed/28469176 http://dx.doi.org/10.1038/ncomms15140 |
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author | Levina, A. Priesemann, V. |
author_facet | Levina, A. Priesemann, V. |
author_sort | Levina, A. |
collection | PubMed |
description | In real-world applications, observations are often constrained to a small fraction of a system. Such spatial subsampling can be caused by the inaccessibility or the sheer size of the system, and cannot be overcome by longer sampling. Spatial subsampling can strongly bias inferences about a system's aggregated properties. To overcome the bias, we derive analytically a subsampling scaling framework that is applicable to different observables, including distributions of neuronal avalanches, of number of people infected during an epidemic outbreak, and of node degrees. We demonstrate how to infer the correct distributions of the underlying full system, how to apply it to distinguish critical from subcritical systems, and how to disentangle subsampling and finite size effects. Lastly, we apply subsampling scaling to neuronal avalanche models and to recordings from developing neural networks. We show that only mature, but not young networks follow power-law scaling, indicating self-organization to criticality during development. |
format | Online Article Text |
id | pubmed-5418619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-54186192017-07-06 Subsampling scaling Levina, A. Priesemann, V. Nat Commun Article In real-world applications, observations are often constrained to a small fraction of a system. Such spatial subsampling can be caused by the inaccessibility or the sheer size of the system, and cannot be overcome by longer sampling. Spatial subsampling can strongly bias inferences about a system's aggregated properties. To overcome the bias, we derive analytically a subsampling scaling framework that is applicable to different observables, including distributions of neuronal avalanches, of number of people infected during an epidemic outbreak, and of node degrees. We demonstrate how to infer the correct distributions of the underlying full system, how to apply it to distinguish critical from subcritical systems, and how to disentangle subsampling and finite size effects. Lastly, we apply subsampling scaling to neuronal avalanche models and to recordings from developing neural networks. We show that only mature, but not young networks follow power-law scaling, indicating self-organization to criticality during development. Nature Publishing Group 2017-05-04 /pmc/articles/PMC5418619/ /pubmed/28469176 http://dx.doi.org/10.1038/ncomms15140 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Levina, A. Priesemann, V. Subsampling scaling |
title | Subsampling scaling |
title_full | Subsampling scaling |
title_fullStr | Subsampling scaling |
title_full_unstemmed | Subsampling scaling |
title_short | Subsampling scaling |
title_sort | subsampling scaling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418619/ https://www.ncbi.nlm.nih.gov/pubmed/28469176 http://dx.doi.org/10.1038/ncomms15140 |
work_keys_str_mv | AT levinaa subsamplingscaling AT priesemannv subsamplingscaling |