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Systematic analysis of the gerontome reveals links between aging and age-related diseases

In model organisms, over 2,000 genes have been shown to modulate aging, the collection of which we call the ‘gerontome’. Although some individual aging-related genes have been the subject of intense scrutiny, their analysis as a whole has been limited. In particular, the genetic interaction of aging...

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Autores principales: Fernandes, Maria, Wan, Cen, Tacutu, Robi, Barardo, Diogo, Rajput, Ashish, Wang, Jingwei, Thoppil, Harikrishnan, Thornton, Daniel, Yang, Chenhao, Freitas, Alex, de Magalhães, João Pedro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418736/
https://www.ncbi.nlm.nih.gov/pubmed/28175300
http://dx.doi.org/10.1093/hmg/ddw307
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author Fernandes, Maria
Wan, Cen
Tacutu, Robi
Barardo, Diogo
Rajput, Ashish
Wang, Jingwei
Thoppil, Harikrishnan
Thornton, Daniel
Yang, Chenhao
Freitas, Alex
de Magalhães, João Pedro
author_facet Fernandes, Maria
Wan, Cen
Tacutu, Robi
Barardo, Diogo
Rajput, Ashish
Wang, Jingwei
Thoppil, Harikrishnan
Thornton, Daniel
Yang, Chenhao
Freitas, Alex
de Magalhães, João Pedro
author_sort Fernandes, Maria
collection PubMed
description In model organisms, over 2,000 genes have been shown to modulate aging, the collection of which we call the ‘gerontome’. Although some individual aging-related genes have been the subject of intense scrutiny, their analysis as a whole has been limited. In particular, the genetic interaction of aging and age-related pathologies remain a subject of debate. In this work, we perform a systematic analysis of the gerontome across species, including human aging-related genes. First, by classifying aging-related genes as pro- or anti-longevity, we define distinct pathways and genes that modulate aging in different ways. Our subsequent comparison of aging-related genes with age-related disease genes reveals species-specific effects with strong overlaps between aging and age-related diseases in mice, yet surprisingly few overlaps in lower model organisms. We discover that genetic links between aging and age-related diseases are due to a small fraction of aging-related genes which also tend to have a high network connectivity. Other insights from our systematic analysis include assessing how using datasets with genes more or less studied than average may result in biases, showing that age-related disease genes have faster molecular evolution rates and predicting new aging-related drugs based on drug-gene interaction data. Overall, this is the largest systems-level analysis of the genetics of aging to date and the first to discriminate anti- and pro-longevity genes, revealing new insights on aging-related genes as a whole and their interactions with age-related diseases.
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spelling pubmed-54187362017-05-10 Systematic analysis of the gerontome reveals links between aging and age-related diseases Fernandes, Maria Wan, Cen Tacutu, Robi Barardo, Diogo Rajput, Ashish Wang, Jingwei Thoppil, Harikrishnan Thornton, Daniel Yang, Chenhao Freitas, Alex de Magalhães, João Pedro Hum Mol Genet Articles In model organisms, over 2,000 genes have been shown to modulate aging, the collection of which we call the ‘gerontome’. Although some individual aging-related genes have been the subject of intense scrutiny, their analysis as a whole has been limited. In particular, the genetic interaction of aging and age-related pathologies remain a subject of debate. In this work, we perform a systematic analysis of the gerontome across species, including human aging-related genes. First, by classifying aging-related genes as pro- or anti-longevity, we define distinct pathways and genes that modulate aging in different ways. Our subsequent comparison of aging-related genes with age-related disease genes reveals species-specific effects with strong overlaps between aging and age-related diseases in mice, yet surprisingly few overlaps in lower model organisms. We discover that genetic links between aging and age-related diseases are due to a small fraction of aging-related genes which also tend to have a high network connectivity. Other insights from our systematic analysis include assessing how using datasets with genes more or less studied than average may result in biases, showing that age-related disease genes have faster molecular evolution rates and predicting new aging-related drugs based on drug-gene interaction data. Overall, this is the largest systems-level analysis of the genetics of aging to date and the first to discriminate anti- and pro-longevity genes, revealing new insights on aging-related genes as a whole and their interactions with age-related diseases. Oxford University Press 2016-11-01 2016-09-04 /pmc/articles/PMC5418736/ /pubmed/28175300 http://dx.doi.org/10.1093/hmg/ddw307 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Fernandes, Maria
Wan, Cen
Tacutu, Robi
Barardo, Diogo
Rajput, Ashish
Wang, Jingwei
Thoppil, Harikrishnan
Thornton, Daniel
Yang, Chenhao
Freitas, Alex
de Magalhães, João Pedro
Systematic analysis of the gerontome reveals links between aging and age-related diseases
title Systematic analysis of the gerontome reveals links between aging and age-related diseases
title_full Systematic analysis of the gerontome reveals links between aging and age-related diseases
title_fullStr Systematic analysis of the gerontome reveals links between aging and age-related diseases
title_full_unstemmed Systematic analysis of the gerontome reveals links between aging and age-related diseases
title_short Systematic analysis of the gerontome reveals links between aging and age-related diseases
title_sort systematic analysis of the gerontome reveals links between aging and age-related diseases
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5418736/
https://www.ncbi.nlm.nih.gov/pubmed/28175300
http://dx.doi.org/10.1093/hmg/ddw307
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