Cargando…
Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme
The cellulose binding domain (CBD) of cellulase binding to cellulosic materials is the initiation of a synergistic action on the enzymatic hydrolysis of the most abundant renewable biomass resources in nature. The binding of the CBD domain to cellulosic substrates generally relies on the interaction...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5419506/ https://www.ncbi.nlm.nih.gov/pubmed/28475645 http://dx.doi.org/10.1371/journal.pone.0176444 |
_version_ | 1783234229606285312 |
---|---|
author | Yang, Jiang-Ke Xiong, Wei Chen, Fang-Yuan Xu, Li Han, Zheng-Gang |
author_facet | Yang, Jiang-Ke Xiong, Wei Chen, Fang-Yuan Xu, Li Han, Zheng-Gang |
author_sort | Yang, Jiang-Ke |
collection | PubMed |
description | The cellulose binding domain (CBD) of cellulase binding to cellulosic materials is the initiation of a synergistic action on the enzymatic hydrolysis of the most abundant renewable biomass resources in nature. The binding of the CBD domain to cellulosic substrates generally relies on the interaction between the aromatic amino acids structurally located on the flat face of the CBD domain and the glucose rings of cellulose. In this study, we found the CBD domain of a newly cloned Penicillium crustosum endoglucanase EGL1, which was phylogenetically related to Aspergillus, Fusarium and Rhizopus, and divergent from the well-characterized Trichoderma reeseis cellulase CBD domain, contain two conserved aromatic amino acid-rich regions, Y(451)-Y(452) and Y(477)-Y(478)-Y(479), among which three amino acids Y(451), Y(477), and Y(478) structurally sited on a flat face of this domain. Cellulose binding assays with green fluorescence protein as the marker, adsorption isotherm assays and an isothermal titration calorimetry assays revealed that although these three amino acids participated in this process, the Y(451)-Y(452) appears to contribute more to the cellulose binding than Y(477)-Y(478)-Y(479). Further glycine scanning mutagenesis and structural modelling revealed that the binding between CBD domain and cellulosic materials might be multi-amino-acids that participated in this process. The flexible poly-glucose molecule could contact Y(451), Y(477), and Y(478) which form the contacting flat face of CBD domain as the typical model, some other amino acids in or outside the flat face might also participate in the interaction. Thus, it is possible that the conserved Y(451)-Y(452) of CBD might have a higher chance of contacting the cellulosic substrates, contributing more to the affinity of CBD than the other amino acids. |
format | Online Article Text |
id | pubmed-5419506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54195062017-05-14 Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme Yang, Jiang-Ke Xiong, Wei Chen, Fang-Yuan Xu, Li Han, Zheng-Gang PLoS One Research Article The cellulose binding domain (CBD) of cellulase binding to cellulosic materials is the initiation of a synergistic action on the enzymatic hydrolysis of the most abundant renewable biomass resources in nature. The binding of the CBD domain to cellulosic substrates generally relies on the interaction between the aromatic amino acids structurally located on the flat face of the CBD domain and the glucose rings of cellulose. In this study, we found the CBD domain of a newly cloned Penicillium crustosum endoglucanase EGL1, which was phylogenetically related to Aspergillus, Fusarium and Rhizopus, and divergent from the well-characterized Trichoderma reeseis cellulase CBD domain, contain two conserved aromatic amino acid-rich regions, Y(451)-Y(452) and Y(477)-Y(478)-Y(479), among which three amino acids Y(451), Y(477), and Y(478) structurally sited on a flat face of this domain. Cellulose binding assays with green fluorescence protein as the marker, adsorption isotherm assays and an isothermal titration calorimetry assays revealed that although these three amino acids participated in this process, the Y(451)-Y(452) appears to contribute more to the cellulose binding than Y(477)-Y(478)-Y(479). Further glycine scanning mutagenesis and structural modelling revealed that the binding between CBD domain and cellulosic materials might be multi-amino-acids that participated in this process. The flexible poly-glucose molecule could contact Y(451), Y(477), and Y(478) which form the contacting flat face of CBD domain as the typical model, some other amino acids in or outside the flat face might also participate in the interaction. Thus, it is possible that the conserved Y(451)-Y(452) of CBD might have a higher chance of contacting the cellulosic substrates, contributing more to the affinity of CBD than the other amino acids. Public Library of Science 2017-05-05 /pmc/articles/PMC5419506/ /pubmed/28475645 http://dx.doi.org/10.1371/journal.pone.0176444 Text en © 2017 Yang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yang, Jiang-Ke Xiong, Wei Chen, Fang-Yuan Xu, Li Han, Zheng-Gang Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title | Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title_full | Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title_fullStr | Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title_full_unstemmed | Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title_short | Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme |
title_sort | aromatic amino acids in the cellulose binding domain of penicillium crustosum endoglucanase egl1 differentially contribute to the cellulose affinity of the enzyme |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5419506/ https://www.ncbi.nlm.nih.gov/pubmed/28475645 http://dx.doi.org/10.1371/journal.pone.0176444 |
work_keys_str_mv | AT yangjiangke aromaticaminoacidsinthecellulosebindingdomainofpenicilliumcrustosumendoglucanaseegl1differentiallycontributetothecelluloseaffinityoftheenzyme AT xiongwei aromaticaminoacidsinthecellulosebindingdomainofpenicilliumcrustosumendoglucanaseegl1differentiallycontributetothecelluloseaffinityoftheenzyme AT chenfangyuan aromaticaminoacidsinthecellulosebindingdomainofpenicilliumcrustosumendoglucanaseegl1differentiallycontributetothecelluloseaffinityoftheenzyme AT xuli aromaticaminoacidsinthecellulosebindingdomainofpenicilliumcrustosumendoglucanaseegl1differentiallycontributetothecelluloseaffinityoftheenzyme AT hanzhenggang aromaticaminoacidsinthecellulosebindingdomainofpenicilliumcrustosumendoglucanaseegl1differentiallycontributetothecelluloseaffinityoftheenzyme |