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Machine learning of accurate energy-conserving molecular force fields

Using conservation of energy—a fundamental property of closed classical and quantum mechanical systems—we develop an efficient gradient-domain machine learning (GDML) approach to construct accurate molecular force fields using a restricted number of samples from ab initio molecular dynamics (AIMD) t...

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Autores principales: Chmiela, Stefan, Tkatchenko, Alexandre, Sauceda, Huziel E., Poltavsky, Igor, Schütt, Kristof T., Müller, Klaus-Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5419702/
https://www.ncbi.nlm.nih.gov/pubmed/28508076
http://dx.doi.org/10.1126/sciadv.1603015
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author Chmiela, Stefan
Tkatchenko, Alexandre
Sauceda, Huziel E.
Poltavsky, Igor
Schütt, Kristof T.
Müller, Klaus-Robert
author_facet Chmiela, Stefan
Tkatchenko, Alexandre
Sauceda, Huziel E.
Poltavsky, Igor
Schütt, Kristof T.
Müller, Klaus-Robert
author_sort Chmiela, Stefan
collection PubMed
description Using conservation of energy—a fundamental property of closed classical and quantum mechanical systems—we develop an efficient gradient-domain machine learning (GDML) approach to construct accurate molecular force fields using a restricted number of samples from ab initio molecular dynamics (AIMD) trajectories. The GDML implementation is able to reproduce global potential energy surfaces of intermediate-sized molecules with an accuracy of 0.3 kcal mol(−1) for energies and 1 kcal mol(−1) Å̊(−1) for atomic forces using only 1000 conformational geometries for training. We demonstrate this accuracy for AIMD trajectories of molecules, including benzene, toluene, naphthalene, ethanol, uracil, and aspirin. The challenge of constructing conservative force fields is accomplished in our work by learning in a Hilbert space of vector-valued functions that obey the law of energy conservation. The GDML approach enables quantitative molecular dynamics simulations for molecules at a fraction of cost of explicit AIMD calculations, thereby allowing the construction of efficient force fields with the accuracy and transferability of high-level ab initio methods.
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spelling pubmed-54197022017-05-15 Machine learning of accurate energy-conserving molecular force fields Chmiela, Stefan Tkatchenko, Alexandre Sauceda, Huziel E. Poltavsky, Igor Schütt, Kristof T. Müller, Klaus-Robert Sci Adv Research Articles Using conservation of energy—a fundamental property of closed classical and quantum mechanical systems—we develop an efficient gradient-domain machine learning (GDML) approach to construct accurate molecular force fields using a restricted number of samples from ab initio molecular dynamics (AIMD) trajectories. The GDML implementation is able to reproduce global potential energy surfaces of intermediate-sized molecules with an accuracy of 0.3 kcal mol(−1) for energies and 1 kcal mol(−1) Å̊(−1) for atomic forces using only 1000 conformational geometries for training. We demonstrate this accuracy for AIMD trajectories of molecules, including benzene, toluene, naphthalene, ethanol, uracil, and aspirin. The challenge of constructing conservative force fields is accomplished in our work by learning in a Hilbert space of vector-valued functions that obey the law of energy conservation. The GDML approach enables quantitative molecular dynamics simulations for molecules at a fraction of cost of explicit AIMD calculations, thereby allowing the construction of efficient force fields with the accuracy and transferability of high-level ab initio methods. American Association for the Advancement of Science 2017-05-05 /pmc/articles/PMC5419702/ /pubmed/28508076 http://dx.doi.org/10.1126/sciadv.1603015 Text en Copyright © 2017, The Authors http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Research Articles
Chmiela, Stefan
Tkatchenko, Alexandre
Sauceda, Huziel E.
Poltavsky, Igor
Schütt, Kristof T.
Müller, Klaus-Robert
Machine learning of accurate energy-conserving molecular force fields
title Machine learning of accurate energy-conserving molecular force fields
title_full Machine learning of accurate energy-conserving molecular force fields
title_fullStr Machine learning of accurate energy-conserving molecular force fields
title_full_unstemmed Machine learning of accurate energy-conserving molecular force fields
title_short Machine learning of accurate energy-conserving molecular force fields
title_sort machine learning of accurate energy-conserving molecular force fields
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5419702/
https://www.ncbi.nlm.nih.gov/pubmed/28508076
http://dx.doi.org/10.1126/sciadv.1603015
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