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Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India
Various aspects of hot springs at Bakreshwar (Lat. 23°52′48″N; Long. 87°22′40″E) in West Bengal, India have been investigated since the middle of 20th century, but comprehending the complete diversity and the complexity of the microbial population therein has been in the continuing process. Some of...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423328/ https://www.ncbi.nlm.nih.gov/pubmed/28507897 http://dx.doi.org/10.1016/j.gdata.2017.04.001 |
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author | Chaudhuri, Biswadeep Chowdhury, Trinath Chattopadhyay, Brajadulal |
author_facet | Chaudhuri, Biswadeep Chowdhury, Trinath Chattopadhyay, Brajadulal |
author_sort | Chaudhuri, Biswadeep |
collection | PubMed |
description | Various aspects of hot springs at Bakreshwar (Lat. 23°52′48″N; Long. 87°22′40″E) in West Bengal, India have been investigated since the middle of 20th century, but comprehending the complete diversity and the complexity of the microbial population therein has been in the continuing process. Some of these microorganisms are found to have immense industrial importance. Microbes generally exist in milieus of varying complexities and diversities. Attempting the usually employed cultivation-based techniques in experimentation with those microbes had confronted various limitations. To overcome these limitations a strategy based on high-throughput sequencing of 16S rRNA gene amplicon analysis was employed for studying the differential diversity and the detailed nature of microbial population of the two hot springs of Bakreshwar (54 °C & 65 °C). Paired-end libraries of amplified V-3 hyper-variable 16S rDNA fragments from sets of samples that varied in their contents, ranging from a single bacterium to highly complex communities were sequenced. The comparison revealed the differential aspects in the two hot spring waters; the samples at 54 °C showed the bacterial phylum Firmicutes (65.85%) and Synergistetes (27.24%) predominating and those from hot spring water at 65 °C showed the abundance of the phyla Firmicutes (96.10%) and Proteobacteria (3.36%). The presence of Archaea in the hot springs could not be ascertained. |
format | Online Article Text |
id | pubmed-5423328 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-54233282017-05-15 Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India Chaudhuri, Biswadeep Chowdhury, Trinath Chattopadhyay, Brajadulal Genom Data Regular Article Various aspects of hot springs at Bakreshwar (Lat. 23°52′48″N; Long. 87°22′40″E) in West Bengal, India have been investigated since the middle of 20th century, but comprehending the complete diversity and the complexity of the microbial population therein has been in the continuing process. Some of these microorganisms are found to have immense industrial importance. Microbes generally exist in milieus of varying complexities and diversities. Attempting the usually employed cultivation-based techniques in experimentation with those microbes had confronted various limitations. To overcome these limitations a strategy based on high-throughput sequencing of 16S rRNA gene amplicon analysis was employed for studying the differential diversity and the detailed nature of microbial population of the two hot springs of Bakreshwar (54 °C & 65 °C). Paired-end libraries of amplified V-3 hyper-variable 16S rDNA fragments from sets of samples that varied in their contents, ranging from a single bacterium to highly complex communities were sequenced. The comparison revealed the differential aspects in the two hot spring waters; the samples at 54 °C showed the bacterial phylum Firmicutes (65.85%) and Synergistetes (27.24%) predominating and those from hot spring water at 65 °C showed the abundance of the phyla Firmicutes (96.10%) and Proteobacteria (3.36%). The presence of Archaea in the hot springs could not be ascertained. Elsevier 2017-04-27 /pmc/articles/PMC5423328/ /pubmed/28507897 http://dx.doi.org/10.1016/j.gdata.2017.04.001 Text en © 2017 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Chaudhuri, Biswadeep Chowdhury, Trinath Chattopadhyay, Brajadulal Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title | Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title_full | Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title_fullStr | Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title_full_unstemmed | Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title_short | Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India |
title_sort | comparative analysis of microbial diversity in two hot springs of bakreshwar, west bengal, india |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423328/ https://www.ncbi.nlm.nih.gov/pubmed/28507897 http://dx.doi.org/10.1016/j.gdata.2017.04.001 |
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