Cargando…

Correlated velocity models as a fundamental unit of animal movement: synthesis and applications

BACKGROUND: Continuous time movement models resolve many of the problems with scaling, sampling, and interpretation that affect discrete movement models. They can, however, be challenging to estimate, have been presented in inconsistent ways, and are not widely used. METHODS: We review the literatur...

Descripción completa

Detalles Bibliográficos
Autores principales: Gurarie, Eliezer, Fleming, Christen H., Fagan, William F., Laidre, Kristin L., Hernández-Pliego, Jesús, Ovaskainen, Otso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5424322/
https://www.ncbi.nlm.nih.gov/pubmed/28496983
http://dx.doi.org/10.1186/s40462-017-0103-3
_version_ 1783235108199727104
author Gurarie, Eliezer
Fleming, Christen H.
Fagan, William F.
Laidre, Kristin L.
Hernández-Pliego, Jesús
Ovaskainen, Otso
author_facet Gurarie, Eliezer
Fleming, Christen H.
Fagan, William F.
Laidre, Kristin L.
Hernández-Pliego, Jesús
Ovaskainen, Otso
author_sort Gurarie, Eliezer
collection PubMed
description BACKGROUND: Continuous time movement models resolve many of the problems with scaling, sampling, and interpretation that affect discrete movement models. They can, however, be challenging to estimate, have been presented in inconsistent ways, and are not widely used. METHODS: We review the literature on integrated Ornstein-Uhlenbeck velocity models and propose four fundamental correlated velocity movement models (CVM’s): random, advective, rotational, and rotational-advective. The models are defined in terms of biologically meaningful speeds and time scales of autocorrelation. We summarize several approaches to estimating the models, and apply these tools for the higher order task of behavioral partitioning via change point analysis. RESULTS: An array of simulation illustrate the precision and accuracy of the estimation tools. An analysis of a swimming track of a bowhead whale (Balaena mysticetus) illustrates their robustness to irregular and sparse sampling and identifies switches between slower and faster, and directed vs. random movements. An analysis of a short flight of a lesser kestrel (Falco naumanni) identifies exact moments when switches occur between loopy, thermal soaring and directed flapping or gliding flights. CONCLUSIONS: We provide tools to estimate parameters and perform change point analyses in continuous time movement models as an R package (smoove). These resources, together with the synthesis, should facilitate the wider application and development of correlated velocity models among movement ecologists. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-017-0103-3) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-5424322
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-54243222017-05-11 Correlated velocity models as a fundamental unit of animal movement: synthesis and applications Gurarie, Eliezer Fleming, Christen H. Fagan, William F. Laidre, Kristin L. Hernández-Pliego, Jesús Ovaskainen, Otso Mov Ecol Methodology Article BACKGROUND: Continuous time movement models resolve many of the problems with scaling, sampling, and interpretation that affect discrete movement models. They can, however, be challenging to estimate, have been presented in inconsistent ways, and are not widely used. METHODS: We review the literature on integrated Ornstein-Uhlenbeck velocity models and propose four fundamental correlated velocity movement models (CVM’s): random, advective, rotational, and rotational-advective. The models are defined in terms of biologically meaningful speeds and time scales of autocorrelation. We summarize several approaches to estimating the models, and apply these tools for the higher order task of behavioral partitioning via change point analysis. RESULTS: An array of simulation illustrate the precision and accuracy of the estimation tools. An analysis of a swimming track of a bowhead whale (Balaena mysticetus) illustrates their robustness to irregular and sparse sampling and identifies switches between slower and faster, and directed vs. random movements. An analysis of a short flight of a lesser kestrel (Falco naumanni) identifies exact moments when switches occur between loopy, thermal soaring and directed flapping or gliding flights. CONCLUSIONS: We provide tools to estimate parameters and perform change point analyses in continuous time movement models as an R package (smoove). These resources, together with the synthesis, should facilitate the wider application and development of correlated velocity models among movement ecologists. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-017-0103-3) contains supplementary material, which is available to authorized users. BioMed Central 2017-05-10 /pmc/articles/PMC5424322/ /pubmed/28496983 http://dx.doi.org/10.1186/s40462-017-0103-3 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Gurarie, Eliezer
Fleming, Christen H.
Fagan, William F.
Laidre, Kristin L.
Hernández-Pliego, Jesús
Ovaskainen, Otso
Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title_full Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title_fullStr Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title_full_unstemmed Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title_short Correlated velocity models as a fundamental unit of animal movement: synthesis and applications
title_sort correlated velocity models as a fundamental unit of animal movement: synthesis and applications
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5424322/
https://www.ncbi.nlm.nih.gov/pubmed/28496983
http://dx.doi.org/10.1186/s40462-017-0103-3
work_keys_str_mv AT gurarieeliezer correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications
AT flemingchristenh correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications
AT faganwilliamf correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications
AT laidrekristinl correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications
AT hernandezpliegojesus correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications
AT ovaskainenotso correlatedvelocitymodelsasafundamentalunitofanimalmovementsynthesisandapplications