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Accuracy Test of the OPLS-AA Force Field for Calculating Free Energies of Mixing and Comparison with PAC-MAC
[Image: see text] We have calculated the excess free energy of mixing of 1053 binary mixtures with the OPLS-AA force field using two different methods: thermodynamic integration (TI) of molecular dynamics simulations and the Pair Configuration to Molecular Activity Coefficient (PAC-MAC) method. PAC-...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425945/ https://www.ncbi.nlm.nih.gov/pubmed/28418655 http://dx.doi.org/10.1021/acs.jctc.6b01106 |
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author | Sweere, Augustinus J. M. Fraaije, Johannes G. E. M. |
author_facet | Sweere, Augustinus J. M. Fraaije, Johannes G. E. M. |
author_sort | Sweere, Augustinus J. M. |
collection | PubMed |
description | [Image: see text] We have calculated the excess free energy of mixing of 1053 binary mixtures with the OPLS-AA force field using two different methods: thermodynamic integration (TI) of molecular dynamics simulations and the Pair Configuration to Molecular Activity Coefficient (PAC-MAC) method. PAC-MAC is a force field based quasi-chemical method for predicting miscibility properties of various binary mixtures. The TI calculations yield a root mean squared error (RMSE) compared to experimental data of 0.132 k(B)T (0.37 kJ/mol). PAC-MAC shows a RMSE of 0.151 k(B)T with a calculation speed being potentially 1.0 × 10(4) times greater than TI. OPLS-AA force field parameters are optimized using PAC-MAC based on vapor–liquid equilibrium data, instead of enthalpies of vaporization or densities. The RMSE of PAC-MAC is reduced to 0.099 k(B)T by optimizing 50 force field parameters. The resulting OPLS-PM force field has a comparable accuracy as the OPLS-AA force field in the calculation of mixing free energies using TI. |
format | Online Article Text |
id | pubmed-5425945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-54259452017-05-12 Accuracy Test of the OPLS-AA Force Field for Calculating Free Energies of Mixing and Comparison with PAC-MAC Sweere, Augustinus J. M. Fraaije, Johannes G. E. M. J Chem Theory Comput [Image: see text] We have calculated the excess free energy of mixing of 1053 binary mixtures with the OPLS-AA force field using two different methods: thermodynamic integration (TI) of molecular dynamics simulations and the Pair Configuration to Molecular Activity Coefficient (PAC-MAC) method. PAC-MAC is a force field based quasi-chemical method for predicting miscibility properties of various binary mixtures. The TI calculations yield a root mean squared error (RMSE) compared to experimental data of 0.132 k(B)T (0.37 kJ/mol). PAC-MAC shows a RMSE of 0.151 k(B)T with a calculation speed being potentially 1.0 × 10(4) times greater than TI. OPLS-AA force field parameters are optimized using PAC-MAC based on vapor–liquid equilibrium data, instead of enthalpies of vaporization or densities. The RMSE of PAC-MAC is reduced to 0.099 k(B)T by optimizing 50 force field parameters. The resulting OPLS-PM force field has a comparable accuracy as the OPLS-AA force field in the calculation of mixing free energies using TI. American Chemical Society 2017-04-18 2017-05-09 /pmc/articles/PMC5425945/ /pubmed/28418655 http://dx.doi.org/10.1021/acs.jctc.6b01106 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Sweere, Augustinus J. M. Fraaije, Johannes G. E. M. Accuracy Test of the OPLS-AA Force Field for Calculating Free Energies of Mixing and Comparison with PAC-MAC |
title | Accuracy Test of the OPLS-AA Force Field for Calculating
Free Energies of Mixing and Comparison with PAC-MAC |
title_full | Accuracy Test of the OPLS-AA Force Field for Calculating
Free Energies of Mixing and Comparison with PAC-MAC |
title_fullStr | Accuracy Test of the OPLS-AA Force Field for Calculating
Free Energies of Mixing and Comparison with PAC-MAC |
title_full_unstemmed | Accuracy Test of the OPLS-AA Force Field for Calculating
Free Energies of Mixing and Comparison with PAC-MAC |
title_short | Accuracy Test of the OPLS-AA Force Field for Calculating
Free Energies of Mixing and Comparison with PAC-MAC |
title_sort | accuracy test of the opls-aa force field for calculating
free energies of mixing and comparison with pac-mac |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425945/ https://www.ncbi.nlm.nih.gov/pubmed/28418655 http://dx.doi.org/10.1021/acs.jctc.6b01106 |
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