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Network science meets respiratory medicine for OSAS phenotyping and severity prediction
Obstructive sleep apnea syndrome (OSAS) is a common clinical condition. The way that OSAS risk factors associate and converge is not a random process. As such, defining OSAS phenotypes fosters personalized patient management and population screening. In this paper, we present a network-based observa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426352/ https://www.ncbi.nlm.nih.gov/pubmed/28503375 http://dx.doi.org/10.7717/peerj.3289 |
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author | Mihaicuta, Stefan Udrescu, Mihai Topirceanu, Alexandru Udrescu, Lucretia |
author_facet | Mihaicuta, Stefan Udrescu, Mihai Topirceanu, Alexandru Udrescu, Lucretia |
author_sort | Mihaicuta, Stefan |
collection | PubMed |
description | Obstructive sleep apnea syndrome (OSAS) is a common clinical condition. The way that OSAS risk factors associate and converge is not a random process. As such, defining OSAS phenotypes fosters personalized patient management and population screening. In this paper, we present a network-based observational, retrospective study on a cohort of 1,371 consecutive OSAS patients and 611 non-OSAS control patients in order to explore the risk factor associations and their correlation with OSAS comorbidities. To this end, we construct the Apnea Patients Network (APN) using patient compatibility relationships according to six objective parameters: age, gender, body mass index (BMI), blood pressure (BP), neck circumference (NC) and the Epworth sleepiness score (ESS). By running targeted network clustering algorithms, we identify eight patient phenotypes and corroborate them with the co-morbidity types. Also, by employing machine learning on the uncovered phenotypes, we derive a classification tree and introduce a computational framework which render the Sleep Apnea Syndrome Score (SAS(Score)); our OSAS score is implemented as an easy-to-use, web-based computer program which requires less than one minute for processing one individual. Our evaluation, performed on a distinct validation database with 231 consecutive patients, reveals that OSAS prediction with SAS(Score) has a significant specificity improvement (an increase of 234%) for only 8.2% sensitivity decrease in comparison with the state-of-the-art score STOP-BANG. The fact that SAS(Score) has bigger specificity makes it appropriate for OSAS screening and risk prediction in big, general populations. |
format | Online Article Text |
id | pubmed-5426352 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54263522017-05-12 Network science meets respiratory medicine for OSAS phenotyping and severity prediction Mihaicuta, Stefan Udrescu, Mihai Topirceanu, Alexandru Udrescu, Lucretia PeerJ Bioinformatics Obstructive sleep apnea syndrome (OSAS) is a common clinical condition. The way that OSAS risk factors associate and converge is not a random process. As such, defining OSAS phenotypes fosters personalized patient management and population screening. In this paper, we present a network-based observational, retrospective study on a cohort of 1,371 consecutive OSAS patients and 611 non-OSAS control patients in order to explore the risk factor associations and their correlation with OSAS comorbidities. To this end, we construct the Apnea Patients Network (APN) using patient compatibility relationships according to six objective parameters: age, gender, body mass index (BMI), blood pressure (BP), neck circumference (NC) and the Epworth sleepiness score (ESS). By running targeted network clustering algorithms, we identify eight patient phenotypes and corroborate them with the co-morbidity types. Also, by employing machine learning on the uncovered phenotypes, we derive a classification tree and introduce a computational framework which render the Sleep Apnea Syndrome Score (SAS(Score)); our OSAS score is implemented as an easy-to-use, web-based computer program which requires less than one minute for processing one individual. Our evaluation, performed on a distinct validation database with 231 consecutive patients, reveals that OSAS prediction with SAS(Score) has a significant specificity improvement (an increase of 234%) for only 8.2% sensitivity decrease in comparison with the state-of-the-art score STOP-BANG. The fact that SAS(Score) has bigger specificity makes it appropriate for OSAS screening and risk prediction in big, general populations. PeerJ Inc. 2017-05-09 /pmc/articles/PMC5426352/ /pubmed/28503375 http://dx.doi.org/10.7717/peerj.3289 Text en ©2017 Mihaicuta et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Mihaicuta, Stefan Udrescu, Mihai Topirceanu, Alexandru Udrescu, Lucretia Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title | Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title_full | Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title_fullStr | Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title_full_unstemmed | Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title_short | Network science meets respiratory medicine for OSAS phenotyping and severity prediction |
title_sort | network science meets respiratory medicine for osas phenotyping and severity prediction |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426352/ https://www.ncbi.nlm.nih.gov/pubmed/28503375 http://dx.doi.org/10.7717/peerj.3289 |
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