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Singularity: Scientific containers for mobility of compute

Here we present Singularity, software developed to bring containers and reproducibility to scientific computing. Using Singularity containers, developers can work in reproducible environments of their choosing and design, and these complete environments can easily be copied and executed on other pla...

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Detalles Bibliográficos
Autores principales: Kurtzer, Gregory M., Sochat, Vanessa, Bauer, Michael W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426675/
https://www.ncbi.nlm.nih.gov/pubmed/28494014
http://dx.doi.org/10.1371/journal.pone.0177459
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author Kurtzer, Gregory M.
Sochat, Vanessa
Bauer, Michael W.
author_facet Kurtzer, Gregory M.
Sochat, Vanessa
Bauer, Michael W.
author_sort Kurtzer, Gregory M.
collection PubMed
description Here we present Singularity, software developed to bring containers and reproducibility to scientific computing. Using Singularity containers, developers can work in reproducible environments of their choosing and design, and these complete environments can easily be copied and executed on other platforms. Singularity is an open source initiative that harnesses the expertise of system and software engineers and researchers alike, and integrates seamlessly into common workflows for both of these groups. As its primary use case, Singularity brings mobility of computing to both users and HPC centers, providing a secure means to capture and distribute software and compute environments. This ability to create and deploy reproducible environments across these centers, a previously unmet need, makes Singularity a game changing development for computational science.
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spelling pubmed-54266752017-05-25 Singularity: Scientific containers for mobility of compute Kurtzer, Gregory M. Sochat, Vanessa Bauer, Michael W. PLoS One Research Article Here we present Singularity, software developed to bring containers and reproducibility to scientific computing. Using Singularity containers, developers can work in reproducible environments of their choosing and design, and these complete environments can easily be copied and executed on other platforms. Singularity is an open source initiative that harnesses the expertise of system and software engineers and researchers alike, and integrates seamlessly into common workflows for both of these groups. As its primary use case, Singularity brings mobility of computing to both users and HPC centers, providing a secure means to capture and distribute software and compute environments. This ability to create and deploy reproducible environments across these centers, a previously unmet need, makes Singularity a game changing development for computational science. Public Library of Science 2017-05-11 /pmc/articles/PMC5426675/ /pubmed/28494014 http://dx.doi.org/10.1371/journal.pone.0177459 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Kurtzer, Gregory M.
Sochat, Vanessa
Bauer, Michael W.
Singularity: Scientific containers for mobility of compute
title Singularity: Scientific containers for mobility of compute
title_full Singularity: Scientific containers for mobility of compute
title_fullStr Singularity: Scientific containers for mobility of compute
title_full_unstemmed Singularity: Scientific containers for mobility of compute
title_short Singularity: Scientific containers for mobility of compute
title_sort singularity: scientific containers for mobility of compute
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5426675/
https://www.ncbi.nlm.nih.gov/pubmed/28494014
http://dx.doi.org/10.1371/journal.pone.0177459
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