Cargando…

HLAscan: genotyping of the HLA region using next-generation sequencing data

BACKGROUND: Several recent studies showed that next-generation sequencing (NGS)-based human leukocyte antigen (HLA) typing is a feasible and promising technique for variant calling of highly polymorphic regions. To date, however, no method with sufficient read depth has completely solved the allele...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ka, Sojeong, Lee, Sunho, Hong, Jonghee, Cho, Yangrae, Sung, Joohon, Kim, Han-Na, Kim, Hyung-Lae, Jung, Jongsun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5427585/ https://www.ncbi.nlm.nih.gov/pubmed/28499414 http://dx.doi.org/10.1186/s12859-017-1671-3

Ejemplares similares

HLA genotyping by next-generation sequencing of complementary DNA
por: Segawa, Hidenobu, et al.
Publicado: (2017)

Development of the variant calling algorithm, ADIScan, and its use to estimate discordant sequences between monozygotic twins
por: Cho, Yangrae, et al.
Publicado: (2018)

High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging
por: Ehrenberg, Philip K, et al.
Publicado: (2014)

Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics
por: Danzer, Martin, et al.
Publicado: (2013)

Next-generation sequencing for HLA typing of class I loci
por: Erlich, Rachel L, et al.
Publicado: (2011)

Phase-defined complete sequencing of the HLA genes by next-generation sequencing
por: Hosomichi, Kazuyoshi, et al.
Publicado: (2013)

Next generation sequencing based in-house HIV genotyping method: validation report
por: Ayitewala, Alisen, et al.
Publicado: (2021)

Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis
por: Sona, Peter, et al.
Publicado: (2018)

Genotyping 1000 yeast strains by next-generation sequencing
por: Wilkening, Stefan, et al.
Publicado: (2013)

Cost-efficient multiplex PCR for routine genotyping of up to nine classical HLA loci in a single analytical run of multiple samples by next generation sequencing
por: Ozaki, Yuki, et al.
Publicado: (2015)

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks
por: Pongor, Lorinc S., et al.
Publicado: (2020)

HLA Typing for the Next Generation
por: Mayor, Neema P., et al.
Publicado: (2015)

Next generation sequencing and de novo transcriptomics to study gene evolution
por: Jayasena, Achala S, et al.
Publicado: (2014)

2.7 million samples genotyped for HLA by next generation sequencing: lessons learned
por: Schöfl, Gerhard, et al.
Publicado: (2017)

Simultaneous genotyping for human platelet antigen systems and HLA-A and HLA-B loci by targeted next-generation sequencing
por: Wang, Jielin, et al.
Publicado: (2022)

Identification of piggyBac-mediated insertions in Plasmodium berghei by next generation sequencing
por: Cao, Yi, et al.
Publicado: (2013)

Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing
por: Cinar, Hediye Nese, et al.
Publicado: (2020)

Application of next-generation sequencing for 24-chromosome aneuploidy screening of human preimplantation embryos
por: Zheng, Haiyan, et al.
Publicado: (2015)

Whole-Genome Sequencing Reveals Age-Specific Changes in the Human Blood Microbiota
por: Lee, Eun-Ju, et al.
Publicado: (2022)

Next generation sequencing of viral RNA genomes
por: Marston, Denise A, et al.
Publicado: (2013)

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing
por: Masser, Dustin R, et al.
Publicado: (2013)

Approaches to the detection of recessive effects using next generation sequencing data from outbred populations
por: Curtis, David
Publicado: (2013)

High quality RNA extraction from Maqui berry for its application in next-generation sequencing
por: Sánchez, Carolina, et al.
Publicado: (2016)

A comparative study on gene-set analysis methods for assessing differential expression associated with the survival phenotype
por: Lee, Seungyeoun, et al.
Publicado: (2011)

Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing
por: Lank, Simon M, et al.
Publicado: (2012)

Comparison of next generation sequencing technologies for transcriptome characterization
por: Wall, P Kerr, et al.
Publicado: (2009)

Next-generation sequencing library construction on a surface
por: Feng, Kuan, et al.
Publicado: (2018)

The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity
por: Dapprich, Johannes, et al.
Publicado: (2016)

Co-extraction of genomic DNA & total RNA from recalcitrant woody tissues for next-generation sequencing studies
por: Zeng, Zhen, et al.
Publicado: (2018)

Transcriptomics Signature from Next-Generation Sequencing Data Reveals New Transcriptomic Biomarkers Related to Prostate Cancer
por: Alkhateeb, Abedalrhman, et al.
Publicado: (2019)

Mosquitoes as a feasible sentinel group for anti-malarial resistance surveillance by Next Generation Sequencing of Plasmodium falciparum
por: Smith-Aguasca, Rebecca, et al.
Publicado: (2019)

All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing
por: Zhao, Sheng, et al.
Publicado: (2020)

Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
por: Healey, Adam, et al.
Publicado: (2014)

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium
por: Bush, William S, et al.
Publicado: (2009)

DeviCNV: detection and visualization of exon-level copy number variants in targeted next-generation sequencing data
por: Kang, Yeeok, et al.
Publicado: (2018)

Design and Validation of a Multiplex KIR and HLA Class I Genotyping Method Using Next Generation Sequencing
por: Closa, Laia, et al.
Publicado: (2018)

Reducing adverse self-medication behaviors in older adults with the Next Generation Personal Education Program (PEP-NG): Design and methodology
por: Neafsey, Patricia J, et al.
Publicado: (2009)

DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification
por: Templeton, Jennifer E L, et al.
Publicado: (2013)

The impact of next-generation sequencing technologies on HLA research
por: Hosomichi, Kazuyoshi, et al.
Publicado: (2015)

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
por: Prosperi, Mattia CF, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_n4jpiqot04br5abkb2cbfm9uj8