Cargando…

Automatic time-shift alignment method for chromatographic data analysis

Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-s...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Qing-Xia, Fu, Hai-Yan, Li, He-Dong, Wang, Bing, Peng, Cui-Hua, Wang, Sheng, Cai, Jun-Lan, Liu, Shao-Feng, Zhang, Xiao-Bing, Yu, Yong-Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428255/
https://www.ncbi.nlm.nih.gov/pubmed/28325916
http://dx.doi.org/10.1038/s41598-017-00390-7
_version_ 1783235776250642432
author Zheng, Qing-Xia
Fu, Hai-Yan
Li, He-Dong
Wang, Bing
Peng, Cui-Hua
Wang, Sheng
Cai, Jun-Lan
Liu, Shao-Feng
Zhang, Xiao-Bing
Yu, Yong-Jie
author_facet Zheng, Qing-Xia
Fu, Hai-Yan
Li, He-Dong
Wang, Bing
Peng, Cui-Hua
Wang, Sheng
Cai, Jun-Lan
Liu, Shao-Feng
Zhang, Xiao-Bing
Yu, Yong-Jie
author_sort Zheng, Qing-Xia
collection PubMed
description Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-shift alignment (ATSA), for complicated chromatographic data analysis. This technique comprised the following alignment stages: (1) automatic baseline correction and peak detection stage for providing useful chromatographic information; (2) preliminary alignment stage through adaptive segment partition to correct alignment for the entire chromatogram; and (3) precise alignment stage based on test chromatographic peak information to accurately align time shift. In ATSA, the chromatographic peak information of both reference and test samples can be completely employed for time-shift alignment to determine segment boundaries and avoid loss of information. ATSA was used to analyze a complicated chromatographic dataset. The obtained correlation coefficients among samples and data analysis efficiency indicated that the influences of time shift can be considerably reduced by ATSA; thus accurate conclusion could be obtained.
format Online
Article
Text
id pubmed-5428255
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-54282552017-05-15 Automatic time-shift alignment method for chromatographic data analysis Zheng, Qing-Xia Fu, Hai-Yan Li, He-Dong Wang, Bing Peng, Cui-Hua Wang, Sheng Cai, Jun-Lan Liu, Shao-Feng Zhang, Xiao-Bing Yu, Yong-Jie Sci Rep Article Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-shift alignment (ATSA), for complicated chromatographic data analysis. This technique comprised the following alignment stages: (1) automatic baseline correction and peak detection stage for providing useful chromatographic information; (2) preliminary alignment stage through adaptive segment partition to correct alignment for the entire chromatogram; and (3) precise alignment stage based on test chromatographic peak information to accurately align time shift. In ATSA, the chromatographic peak information of both reference and test samples can be completely employed for time-shift alignment to determine segment boundaries and avoid loss of information. ATSA was used to analyze a complicated chromatographic dataset. The obtained correlation coefficients among samples and data analysis efficiency indicated that the influences of time shift can be considerably reduced by ATSA; thus accurate conclusion could be obtained. Nature Publishing Group UK 2017-03-21 /pmc/articles/PMC5428255/ /pubmed/28325916 http://dx.doi.org/10.1038/s41598-017-00390-7 Text en © The Author(s) 2017 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Zheng, Qing-Xia
Fu, Hai-Yan
Li, He-Dong
Wang, Bing
Peng, Cui-Hua
Wang, Sheng
Cai, Jun-Lan
Liu, Shao-Feng
Zhang, Xiao-Bing
Yu, Yong-Jie
Automatic time-shift alignment method for chromatographic data analysis
title Automatic time-shift alignment method for chromatographic data analysis
title_full Automatic time-shift alignment method for chromatographic data analysis
title_fullStr Automatic time-shift alignment method for chromatographic data analysis
title_full_unstemmed Automatic time-shift alignment method for chromatographic data analysis
title_short Automatic time-shift alignment method for chromatographic data analysis
title_sort automatic time-shift alignment method for chromatographic data analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428255/
https://www.ncbi.nlm.nih.gov/pubmed/28325916
http://dx.doi.org/10.1038/s41598-017-00390-7
work_keys_str_mv AT zhengqingxia automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT fuhaiyan automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT lihedong automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT wangbing automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT pengcuihua automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT wangsheng automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT caijunlan automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT liushaofeng automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT zhangxiaobing automatictimeshiftalignmentmethodforchromatographicdataanalysis
AT yuyongjie automatictimeshiftalignmentmethodforchromatographicdataanalysis