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Automatic time-shift alignment method for chromatographic data analysis
Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-s...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428255/ https://www.ncbi.nlm.nih.gov/pubmed/28325916 http://dx.doi.org/10.1038/s41598-017-00390-7 |
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author | Zheng, Qing-Xia Fu, Hai-Yan Li, He-Dong Wang, Bing Peng, Cui-Hua Wang, Sheng Cai, Jun-Lan Liu, Shao-Feng Zhang, Xiao-Bing Yu, Yong-Jie |
author_facet | Zheng, Qing-Xia Fu, Hai-Yan Li, He-Dong Wang, Bing Peng, Cui-Hua Wang, Sheng Cai, Jun-Lan Liu, Shao-Feng Zhang, Xiao-Bing Yu, Yong-Jie |
author_sort | Zheng, Qing-Xia |
collection | PubMed |
description | Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-shift alignment (ATSA), for complicated chromatographic data analysis. This technique comprised the following alignment stages: (1) automatic baseline correction and peak detection stage for providing useful chromatographic information; (2) preliminary alignment stage through adaptive segment partition to correct alignment for the entire chromatogram; and (3) precise alignment stage based on test chromatographic peak information to accurately align time shift. In ATSA, the chromatographic peak information of both reference and test samples can be completely employed for time-shift alignment to determine segment boundaries and avoid loss of information. ATSA was used to analyze a complicated chromatographic dataset. The obtained correlation coefficients among samples and data analysis efficiency indicated that the influences of time shift can be considerably reduced by ATSA; thus accurate conclusion could be obtained. |
format | Online Article Text |
id | pubmed-5428255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54282552017-05-15 Automatic time-shift alignment method for chromatographic data analysis Zheng, Qing-Xia Fu, Hai-Yan Li, He-Dong Wang, Bing Peng, Cui-Hua Wang, Sheng Cai, Jun-Lan Liu, Shao-Feng Zhang, Xiao-Bing Yu, Yong-Jie Sci Rep Article Time shift among samples remains a significant challenge in data analysis, such as quality control of natural plant extracts and metabolic profiling analysis, because this phenomenon may lead to invalid conclusions. In this work, we propose a new time shift alignment method, namely, automatic time-shift alignment (ATSA), for complicated chromatographic data analysis. This technique comprised the following alignment stages: (1) automatic baseline correction and peak detection stage for providing useful chromatographic information; (2) preliminary alignment stage through adaptive segment partition to correct alignment for the entire chromatogram; and (3) precise alignment stage based on test chromatographic peak information to accurately align time shift. In ATSA, the chromatographic peak information of both reference and test samples can be completely employed for time-shift alignment to determine segment boundaries and avoid loss of information. ATSA was used to analyze a complicated chromatographic dataset. The obtained correlation coefficients among samples and data analysis efficiency indicated that the influences of time shift can be considerably reduced by ATSA; thus accurate conclusion could be obtained. Nature Publishing Group UK 2017-03-21 /pmc/articles/PMC5428255/ /pubmed/28325916 http://dx.doi.org/10.1038/s41598-017-00390-7 Text en © The Author(s) 2017 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zheng, Qing-Xia Fu, Hai-Yan Li, He-Dong Wang, Bing Peng, Cui-Hua Wang, Sheng Cai, Jun-Lan Liu, Shao-Feng Zhang, Xiao-Bing Yu, Yong-Jie Automatic time-shift alignment method for chromatographic data analysis |
title | Automatic time-shift alignment method for chromatographic data analysis |
title_full | Automatic time-shift alignment method for chromatographic data analysis |
title_fullStr | Automatic time-shift alignment method for chromatographic data analysis |
title_full_unstemmed | Automatic time-shift alignment method for chromatographic data analysis |
title_short | Automatic time-shift alignment method for chromatographic data analysis |
title_sort | automatic time-shift alignment method for chromatographic data analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428255/ https://www.ncbi.nlm.nih.gov/pubmed/28325916 http://dx.doi.org/10.1038/s41598-017-00390-7 |
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