Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.

The objective of the present study was to evaluate the species diversity of eels native to Aceh waters based on genetic data. Sampling was conducted in western coast waters of Aceh Province, Indonesia, from July to August 2016. Genomic DNA was extracted from the samples, a genomic region from the 5’...

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Autores principales: Muchlisin, Zainal A., Batubara, Agung Setia, Fadli, Nur, Muhammadar, Abdullah A., Utami, Afrita Ida, Farhana, Nurul, Siti-Azizah, Mohd Nor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Research Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428524/
https://www.ncbi.nlm.nih.gov/pubmed/28529702
http://dx.doi.org/10.12688/f1000research.10715.1
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author Muchlisin, Zainal A.
Batubara, Agung Setia
Fadli, Nur
Muhammadar, Abdullah A.
Utami, Afrita Ida
Farhana, Nurul
Siti-Azizah, Mohd Nor
author_facet Muchlisin, Zainal A.
Batubara, Agung Setia
Fadli, Nur
Muhammadar, Abdullah A.
Utami, Afrita Ida
Farhana, Nurul
Siti-Azizah, Mohd Nor
author_sort Muchlisin, Zainal A.
collection PubMed
description The objective of the present study was to evaluate the species diversity of eels native to Aceh waters based on genetic data. Sampling was conducted in western coast waters of Aceh Province, Indonesia, from July to August 2016. Genomic DNA was extracted from the samples, a genomic region from the 5’ region of the cox1 gene was amplified and sequenced, and this was then used to analyse genetic variation. The genetic sequences were blasted into the NCBI database. Based on this analysis there were three valid species of eels that occurred in Aceh waters, namely Anguilla marmorata, A. bicolor bicolor, and A. bengalensis bengalensis.
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spelling pubmed-54285242017-05-18 Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. Muchlisin, Zainal A. Batubara, Agung Setia Fadli, Nur Muhammadar, Abdullah A. Utami, Afrita Ida Farhana, Nurul Siti-Azizah, Mohd Nor F1000Res Research Note The objective of the present study was to evaluate the species diversity of eels native to Aceh waters based on genetic data. Sampling was conducted in western coast waters of Aceh Province, Indonesia, from July to August 2016. Genomic DNA was extracted from the samples, a genomic region from the 5’ region of the cox1 gene was amplified and sequenced, and this was then used to analyse genetic variation. The genetic sequences were blasted into the NCBI database. Based on this analysis there were three valid species of eels that occurred in Aceh waters, namely Anguilla marmorata, A. bicolor bicolor, and A. bengalensis bengalensis. F1000Research 2017-03-13 /pmc/articles/PMC5428524/ /pubmed/28529702 http://dx.doi.org/10.12688/f1000research.10715.1 Text en Copyright: © 2017 Muchlisin ZA et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The author(s) is/are employees of the US Government and therefore domestic copyright protection in USA does not apply to this work. The work may be protected under the copyright laws of other jurisdictions when used in those jurisdictions.
spellingShingle Research Note
Muchlisin, Zainal A.
Batubara, Agung Setia
Fadli, Nur
Muhammadar, Abdullah A.
Utami, Afrita Ida
Farhana, Nurul
Siti-Azizah, Mohd Nor
Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title_full Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title_fullStr Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title_full_unstemmed Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title_short Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1.
title_sort assessing the species composition of tropical eels (anguillidae) in aceh waters, indonesia, with dna barcoding gene cox1.
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428524/
https://www.ncbi.nlm.nih.gov/pubmed/28529702
http://dx.doi.org/10.12688/f1000research.10715.1
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