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Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury

Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the...

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Autores principales: Pan, Bin, Zhou, Heng-Xing, Liu, Yi, Yan, Jia-Yin, Wang, Yao, Yao, Xue, Deng, Yan-Qiu, Chen, Shu-Yi, Lu, Lu, Wei, Zhi-Jian, Kong, Xiao-Hong, Feng, Shi-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428966/
https://www.ncbi.nlm.nih.gov/pubmed/28440471
http://dx.doi.org/10.3892/ijmm.2017.2963
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author Pan, Bin
Zhou, Heng-Xing
Liu, Yi
Yan, Jia-Yin
Wang, Yao
Yao, Xue
Deng, Yan-Qiu
Chen, Shu-Yi
Lu, Lu
Wei, Zhi-Jian
Kong, Xiao-Hong
Feng, Shi-Qing
author_facet Pan, Bin
Zhou, Heng-Xing
Liu, Yi
Yan, Jia-Yin
Wang, Yao
Yao, Xue
Deng, Yan-Qiu
Chen, Shu-Yi
Lu, Lu
Wei, Zhi-Jian
Kong, Xiao-Hong
Feng, Shi-Qing
author_sort Pan, Bin
collection PubMed
description Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the sciatic nerve at 0, 3, 7 and 14 days following injury. We identified 5,354 lncRNAs that were differentially expressed: 3,788 lncRNAs were differentially expressed between days 0 and 3; 3,314 lncRNAs were differentially expressed between days 0 and 7; and 2,400 lncRNAs were differentially expressed between days 0 and 14. The results of RT-qPCR of two dysregulated lncRNAs were consistent with those of microarray analysis. Bioinformatics approaches, including lncRNA classification, gene ontology (GO) analysis and target prediction, were utilized to investigate the functions of these dysregulated lncRNAs in peripheral nerve damage. Importantly, we predicted that several lncRNA-mRNA pairs may participate in biological processes related to peripheral nerve injury. RT-qPCR was performed for the preliminary verification of three lncRNA-mRNA pairs. The overexpression of NONMMUG014387 promoted the proliferation of mouse Schwann cells. Thus, the findings of our study may enhance our knowledge of the role of lncRNAs in nerve injury.
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spelling pubmed-54289662017-05-15 Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury Pan, Bin Zhou, Heng-Xing Liu, Yi Yan, Jia-Yin Wang, Yao Yao, Xue Deng, Yan-Qiu Chen, Shu-Yi Lu, Lu Wei, Zhi-Jian Kong, Xiao-Hong Feng, Shi-Qing Int J Mol Med Articles Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the sciatic nerve at 0, 3, 7 and 14 days following injury. We identified 5,354 lncRNAs that were differentially expressed: 3,788 lncRNAs were differentially expressed between days 0 and 3; 3,314 lncRNAs were differentially expressed between days 0 and 7; and 2,400 lncRNAs were differentially expressed between days 0 and 14. The results of RT-qPCR of two dysregulated lncRNAs were consistent with those of microarray analysis. Bioinformatics approaches, including lncRNA classification, gene ontology (GO) analysis and target prediction, were utilized to investigate the functions of these dysregulated lncRNAs in peripheral nerve damage. Importantly, we predicted that several lncRNA-mRNA pairs may participate in biological processes related to peripheral nerve injury. RT-qPCR was performed for the preliminary verification of three lncRNA-mRNA pairs. The overexpression of NONMMUG014387 promoted the proliferation of mouse Schwann cells. Thus, the findings of our study may enhance our knowledge of the role of lncRNAs in nerve injury. D.A. Spandidos 2017-06 2017-04-21 /pmc/articles/PMC5428966/ /pubmed/28440471 http://dx.doi.org/10.3892/ijmm.2017.2963 Text en Copyright: © Pan et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Pan, Bin
Zhou, Heng-Xing
Liu, Yi
Yan, Jia-Yin
Wang, Yao
Yao, Xue
Deng, Yan-Qiu
Chen, Shu-Yi
Lu, Lu
Wei, Zhi-Jian
Kong, Xiao-Hong
Feng, Shi-Qing
Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title_full Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title_fullStr Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title_full_unstemmed Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title_short Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
title_sort time-dependent differential expression of long non-coding rnas following peripheral nerve injury
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428966/
https://www.ncbi.nlm.nih.gov/pubmed/28440471
http://dx.doi.org/10.3892/ijmm.2017.2963
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