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Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury
Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428966/ https://www.ncbi.nlm.nih.gov/pubmed/28440471 http://dx.doi.org/10.3892/ijmm.2017.2963 |
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author | Pan, Bin Zhou, Heng-Xing Liu, Yi Yan, Jia-Yin Wang, Yao Yao, Xue Deng, Yan-Qiu Chen, Shu-Yi Lu, Lu Wei, Zhi-Jian Kong, Xiao-Hong Feng, Shi-Qing |
author_facet | Pan, Bin Zhou, Heng-Xing Liu, Yi Yan, Jia-Yin Wang, Yao Yao, Xue Deng, Yan-Qiu Chen, Shu-Yi Lu, Lu Wei, Zhi-Jian Kong, Xiao-Hong Feng, Shi-Qing |
author_sort | Pan, Bin |
collection | PubMed |
description | Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the sciatic nerve at 0, 3, 7 and 14 days following injury. We identified 5,354 lncRNAs that were differentially expressed: 3,788 lncRNAs were differentially expressed between days 0 and 3; 3,314 lncRNAs were differentially expressed between days 0 and 7; and 2,400 lncRNAs were differentially expressed between days 0 and 14. The results of RT-qPCR of two dysregulated lncRNAs were consistent with those of microarray analysis. Bioinformatics approaches, including lncRNA classification, gene ontology (GO) analysis and target prediction, were utilized to investigate the functions of these dysregulated lncRNAs in peripheral nerve damage. Importantly, we predicted that several lncRNA-mRNA pairs may participate in biological processes related to peripheral nerve injury. RT-qPCR was performed for the preliminary verification of three lncRNA-mRNA pairs. The overexpression of NONMMUG014387 promoted the proliferation of mouse Schwann cells. Thus, the findings of our study may enhance our knowledge of the role of lncRNAs in nerve injury. |
format | Online Article Text |
id | pubmed-5428966 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-54289662017-05-15 Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury Pan, Bin Zhou, Heng-Xing Liu, Yi Yan, Jia-Yin Wang, Yao Yao, Xue Deng, Yan-Qiu Chen, Shu-Yi Lu, Lu Wei, Zhi-Jian Kong, Xiao-Hong Feng, Shi-Qing Int J Mol Med Articles Long non-coding RNAs (lncRNAs) are widely accepted as key players in various biological processes. However, the roles of lncRNA in peripheral nerve regeneration remain completely unknown. Thus, in this study, we performed microarray analysis to measure lncRNA expression in the distal segment of the sciatic nerve at 0, 3, 7 and 14 days following injury. We identified 5,354 lncRNAs that were differentially expressed: 3,788 lncRNAs were differentially expressed between days 0 and 3; 3,314 lncRNAs were differentially expressed between days 0 and 7; and 2,400 lncRNAs were differentially expressed between days 0 and 14. The results of RT-qPCR of two dysregulated lncRNAs were consistent with those of microarray analysis. Bioinformatics approaches, including lncRNA classification, gene ontology (GO) analysis and target prediction, were utilized to investigate the functions of these dysregulated lncRNAs in peripheral nerve damage. Importantly, we predicted that several lncRNA-mRNA pairs may participate in biological processes related to peripheral nerve injury. RT-qPCR was performed for the preliminary verification of three lncRNA-mRNA pairs. The overexpression of NONMMUG014387 promoted the proliferation of mouse Schwann cells. Thus, the findings of our study may enhance our knowledge of the role of lncRNAs in nerve injury. D.A. Spandidos 2017-06 2017-04-21 /pmc/articles/PMC5428966/ /pubmed/28440471 http://dx.doi.org/10.3892/ijmm.2017.2963 Text en Copyright: © Pan et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Pan, Bin Zhou, Heng-Xing Liu, Yi Yan, Jia-Yin Wang, Yao Yao, Xue Deng, Yan-Qiu Chen, Shu-Yi Lu, Lu Wei, Zhi-Jian Kong, Xiao-Hong Feng, Shi-Qing Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title | Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title_full | Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title_fullStr | Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title_full_unstemmed | Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title_short | Time-dependent differential expression of long non-coding RNAs following peripheral nerve injury |
title_sort | time-dependent differential expression of long non-coding rnas following peripheral nerve injury |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5428966/ https://www.ncbi.nlm.nih.gov/pubmed/28440471 http://dx.doi.org/10.3892/ijmm.2017.2963 |
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