Cargando…

Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure

Current culture methods to investigate changes in Escherichia coli community structure are often slow and laborious. Genes such as gnd (6-phosphogluconate dehydrogenase) have a highly variable nucleotide sequence and may provide a target for E. coli microbiome analysis using culture-independent meth...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cookson, Adrian L., Biggs, Patrick J., Marshall, Jonathan C., Reynolds, Angela, Collis, Rose M., French, Nigel P., Brightwell, Gale
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5429811/ https://www.ncbi.nlm.nih.gov/pubmed/28404985 http://dx.doi.org/10.1038/s41598-017-00890-6

Ejemplares similares

gndDb, a Database of Partial gnd Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing
por: Cookson, Adrian L., et al.
Publicado: (2019)

Genomic epidemiology and carbon metabolism of Escherichia coli serogroup O145 reflect contrasting phylogenies
por: Collis, Rose M., et al.
Publicado: (2020)

Prevalence and distribution of extended-spectrum β-lactamase and AmpC-producing Escherichia coli in two New Zealand dairy farm environments
por: Collis, Rose M., et al.
Publicado: (2022)

Whole-Genome Sequencing and Virulome Analysis of Escherichia coli Isolated from New Zealand Environments of Contrasting Observed Land Use
por: Cookson, Adrian L., et al.
Publicado: (2022)

Whole genome sequence analysis of ESBL-producing Escherichia coli recovered from New Zealand freshwater sites
por: Burgess, Sara A., et al.
Publicado: (2022)

Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli (STEC) on New Zealand Dairy Farms: Application of a Culture-Independent Assay and Whole-Genome Sequencing
por: Browne, A. Springer, et al.
Publicado: (2018)

Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome
por: McCloskey, Douglas, et al.
Publicado: (2018)

The epidemiology of AmpC-producing Escherichia coli isolated from dairy cattle faeces on pasture-fed farms
por: Burgess, Sara A., et al.
Publicado: (2021)

Transmission Dynamics of Shiga Toxin-Producing Escherichia coli in New Zealand Cattle from Farm to Slaughter
por: Browne, A. Springer, et al.
Publicado: (2021)

Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1
por: He, Weiwei, et al.
Publicado: (2007)

Statistical Fractal Models Based on GND-PCA and Its Application on Classification of Liver Diseases
por: Jiang, Huiyan, et al.
Publicado: (2013)

GND-PCA-Based Statistical Modeling of Diaphragm Motion Extracted from 4D MRI
por: Swastika, Windra, et al.
Publicado: (2013)

Draft Whole-Genome Sequences of Three Diarrheagenic Escherichia coli Strains Isolated from Farmed Deer in New Zealand
por: Browne, A. Springer, et al.
Publicado: (2018)

Co-production of hydrogen and ethanol from glucose in Escherichia coli by activation of pentose-phosphate pathway through deletion of phosphoglucose isomerase (pgi) and overexpression of glucose-6-phosphate dehydrogenase (zwf) and 6-phosphogluconate dehydrogenase (gnd)
por: Sundara Sekar, Balaji, et al.
Publicado: (2017)

Geographic Divergence of Bovine and Human Shiga Toxin–Producing Escherichia coli O157:H7 Genotypes, New Zealand
por: Jaros, Patricia, et al.
Publicado: (2014)

Use of Genomics to Investigate Historical Importation of Shiga Toxin–Producing Escherichia coli Serogroup O26 and Nontoxigenic Variants into New Zealand
por: Browne, A. Springer, et al.
Publicado: (2019)

Tunable Switching between Slow and Fast Light in the Graphene Nanodisks (GND)–Quantum Dot (QD) Plasmonic Hybrid Systems
por: Almzargah, Ghadah M., et al.
Publicado: (2023)

A prospective case–control and molecular epidemiological study of human cases of Shiga toxin-producing Escherichia coli in New Zealand
por: Jaros, Patricia, et al.
Publicado: (2013)

Safety of Alternative Proteins: Technological, Environmental and Regulatory Aspects of Cultured Meat, Plant-Based Meat, Insect Protein and Single-Cell Protein
por: Hadi, Joshua, et al.
Publicado: (2021)

Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
por: Olsen, Nikoline S., et al.
Publicado: (2020)

A ‘Plug and Play’ Platform for the Production of Diverse Monoterpene Hydrocarbon Scaffolds in Escherichia coli
por: Leferink, Nicole G. H., et al.
Publicado: (2016)

A Statistical Texture Model of the Liver Based on Generalized N-Dimensional Principal Component Analysis (GND-PCA) and 3D Shape Normalization
por: Qiao, Xu, et al.
Publicado: (2011)

Carriage of Extended-Spectrum-Beta-Lactamase- and AmpC Beta-Lactamase-Producing Escherichia coli Strains from Humans and Pets in the Same Households
por: Toombs-Ruane, Leah J., et al.
Publicado: (2020)

Sampling and diversity of Escherichia coli from the enteric microbiota in patients with Escherichia coli bacteraemia
por: Mosavie, Mia, et al.
Publicado: (2019)

Direct observation of independently moving replisomes in Escherichia coli
por: Japaridze, Aleksandre, et al.
Publicado: (2020)

Population Diversity of ORFan Genes in Escherichia coli
por: Yu, Guoqin, et al.
Publicado: (2012)

Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association
por: Strachan, Norval J. C., et al.
Publicado: (2015)

Draft Genome Sequence of a Canine Uropathogenic Escherichia coli Strain Isolated in New Zealand
por: Le, Vuong V. H., et al.
Publicado: (2019)

Independent Positioning and Action of Escherichia coli Replisomes in Live Cells
por: Reyes-Lamothe, Rodrigo, et al.
Publicado: (2008)

Independent mobility of proteins and lipids in the plasma membrane of Escherichia coli
por: Nenninger, Anja, et al.
Publicado: (2014)

The Escherichia coli transcriptome mostly consists of independently regulated modules
por: Sastry, Anand V., et al.
Publicado: (2019)

Characterization of diverse homoserine lactone synthases in Escherichia coli
por: Daer, René, et al.
Publicado: (2018)

Microbiome diversity in carriers of fluoroquinolone resistant Escherichia coli
por: Liss, Michael A., et al.
Publicado: (2019)

Distribution of Diverse Escherichia coli between Cattle and Pasture
por: NandaKafle, Gitanjali, et al.
Publicado: (2017)

Diversity of the Tellurite Resistance Gene Operon in Escherichia coli
por: Nguyen, Thi Thu Huong, et al.
Publicado: (2021)

THE RATE OF BACTERIOPHAGE INACTIVATION BY FILTRATES OF ESCHERICHIA COLI CULTURES
por: Ellis, Emory L., et al.
Publicado: (1941)

The Effects of Eugenol, Trans-Cinnamaldehyde, Citronellol, and Terpineol on Escherichia coli Biofilm Control as Assessed by Culture-Dependent and -Independent Methods
por: Olszewska, Magdalena A., et al.
Publicado: (2020)

COLONIZATION OF THE MOUSE INTESTINE WITH ESCHERICHIA COLI
por: Mushin, Rose, et al.
Publicado: (1965)

Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
por: Wheeler, Nicole E., et al.
Publicado: (2019)

Genetic and Ecological Diversity of Escherichia coli and Cryptic Escherichia Clades in Subtropical Aquatic Environments
por: Koh, Xiu Pei, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_2rlfhs1jm4f23rafagfdvlunu7