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StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors

Comprehensive genetic profiling of tumors using next‐generation sequencing (NGS) is gaining acceptance for guiding treatment decisions in cancer care. We designed a cancer profiling test combining both deep sequencing and immunohistochemistry (IHC) of relevant cancer targets to aid therapy choices i...

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Autores principales: Sen, Manimala, Katragadda, Shanmukh, Ravichandran, Aarthi, Deshpande, Gouri, Parulekar, Minothi, Nayanala, Swetha, Vittal, Vikram, Shen, Weiming, Phooi Nee Yong, Melanie, Jacob, Jemima, Parchuru, Sravanthi, Dhanuskodi, Kalpana, Eyring, Kenneth, Agrawal, Pooja, Agarwal, Smita, Shanmugam, Ashwini, Gupta, Satish, Vishwanath, Divya, Kumari, Kiran, Hariharan, Arun K., Balaji, Sai A., Liang, Qiaoling, Robolledo, Belen, Gauribidanur Raghavendrachar, Vijayashree, Oomer Farooque, Mohammed, Buresh, Cary J., Ramamoorthy, Preveen, Bahadur, Urvashi, Subramanian, Kalyanasundaram, Hariharan, Ramesh, Veeramachaneni, Vamsi, Sankaran, Satish, Gupta, Vaijayanti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430095/
https://www.ncbi.nlm.nih.gov/pubmed/28371134
http://dx.doi.org/10.1002/cam4.1037
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author Sen, Manimala
Katragadda, Shanmukh
Ravichandran, Aarthi
Deshpande, Gouri
Parulekar, Minothi
Nayanala, Swetha
Vittal, Vikram
Shen, Weiming
Phooi Nee Yong, Melanie
Jacob, Jemima
Parchuru, Sravanthi
Dhanuskodi, Kalpana
Eyring, Kenneth
Agrawal, Pooja
Agarwal, Smita
Shanmugam, Ashwini
Gupta, Satish
Vishwanath, Divya
Kumari, Kiran
Hariharan, Arun K.
Balaji, Sai A.
Liang, Qiaoling
Robolledo, Belen
Gauribidanur Raghavendrachar, Vijayashree
Oomer Farooque, Mohammed
Buresh, Cary J.
Ramamoorthy, Preveen
Bahadur, Urvashi
Subramanian, Kalyanasundaram
Hariharan, Ramesh
Veeramachaneni, Vamsi
Sankaran, Satish
Gupta, Vaijayanti
author_facet Sen, Manimala
Katragadda, Shanmukh
Ravichandran, Aarthi
Deshpande, Gouri
Parulekar, Minothi
Nayanala, Swetha
Vittal, Vikram
Shen, Weiming
Phooi Nee Yong, Melanie
Jacob, Jemima
Parchuru, Sravanthi
Dhanuskodi, Kalpana
Eyring, Kenneth
Agrawal, Pooja
Agarwal, Smita
Shanmugam, Ashwini
Gupta, Satish
Vishwanath, Divya
Kumari, Kiran
Hariharan, Arun K.
Balaji, Sai A.
Liang, Qiaoling
Robolledo, Belen
Gauribidanur Raghavendrachar, Vijayashree
Oomer Farooque, Mohammed
Buresh, Cary J.
Ramamoorthy, Preveen
Bahadur, Urvashi
Subramanian, Kalyanasundaram
Hariharan, Ramesh
Veeramachaneni, Vamsi
Sankaran, Satish
Gupta, Vaijayanti
author_sort Sen, Manimala
collection PubMed
description Comprehensive genetic profiling of tumors using next‐generation sequencing (NGS) is gaining acceptance for guiding treatment decisions in cancer care. We designed a cancer profiling test combining both deep sequencing and immunohistochemistry (IHC) of relevant cancer targets to aid therapy choices in both standard‐of‐care (SOC) and advanced‐stage treatments for solid tumors. The SOC report is provided in a short turnaround time for four tumors, namely lung, breast, colon, and melanoma, followed by an investigational report. For other tumor types, an investigational report is provided. The NGS assay reports single‐nucleotide variants (SNVs), copy number variations (CNVs), and translocations in 152 cancer‐related genes. The tissue‐specific IHC tests include routine and less common markers associated with drugs used in SOC settings. We describe the standardization, validation, and clinical utility of the StrandAdvantage test (SA test) using more than 250 solid tumor formalin‐fixed paraffin‐embedded (FFPE) samples and control cell line samples. The NGS test showed high reproducibility and accuracy of >99%. The test provided relevant clinical information for SOC treatment as well as more information related to investigational options and clinical trials for >95% of advanced‐stage patients. In conclusion, the SA test comprising a robust and accurate NGS assay combined with clinically relevant IHC tests can detect somatic changes of clinical significance for strategic cancer management in all the stages.
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spelling pubmed-54300952017-05-17 StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors Sen, Manimala Katragadda, Shanmukh Ravichandran, Aarthi Deshpande, Gouri Parulekar, Minothi Nayanala, Swetha Vittal, Vikram Shen, Weiming Phooi Nee Yong, Melanie Jacob, Jemima Parchuru, Sravanthi Dhanuskodi, Kalpana Eyring, Kenneth Agrawal, Pooja Agarwal, Smita Shanmugam, Ashwini Gupta, Satish Vishwanath, Divya Kumari, Kiran Hariharan, Arun K. Balaji, Sai A. Liang, Qiaoling Robolledo, Belen Gauribidanur Raghavendrachar, Vijayashree Oomer Farooque, Mohammed Buresh, Cary J. Ramamoorthy, Preveen Bahadur, Urvashi Subramanian, Kalyanasundaram Hariharan, Ramesh Veeramachaneni, Vamsi Sankaran, Satish Gupta, Vaijayanti Cancer Med Clinical Cancer Research Comprehensive genetic profiling of tumors using next‐generation sequencing (NGS) is gaining acceptance for guiding treatment decisions in cancer care. We designed a cancer profiling test combining both deep sequencing and immunohistochemistry (IHC) of relevant cancer targets to aid therapy choices in both standard‐of‐care (SOC) and advanced‐stage treatments for solid tumors. The SOC report is provided in a short turnaround time for four tumors, namely lung, breast, colon, and melanoma, followed by an investigational report. For other tumor types, an investigational report is provided. The NGS assay reports single‐nucleotide variants (SNVs), copy number variations (CNVs), and translocations in 152 cancer‐related genes. The tissue‐specific IHC tests include routine and less common markers associated with drugs used in SOC settings. We describe the standardization, validation, and clinical utility of the StrandAdvantage test (SA test) using more than 250 solid tumor formalin‐fixed paraffin‐embedded (FFPE) samples and control cell line samples. The NGS test showed high reproducibility and accuracy of >99%. The test provided relevant clinical information for SOC treatment as well as more information related to investigational options and clinical trials for >95% of advanced‐stage patients. In conclusion, the SA test comprising a robust and accurate NGS assay combined with clinically relevant IHC tests can detect somatic changes of clinical significance for strategic cancer management in all the stages. John Wiley and Sons Inc. 2017-04-03 /pmc/articles/PMC5430095/ /pubmed/28371134 http://dx.doi.org/10.1002/cam4.1037 Text en © 2017 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Clinical Cancer Research
Sen, Manimala
Katragadda, Shanmukh
Ravichandran, Aarthi
Deshpande, Gouri
Parulekar, Minothi
Nayanala, Swetha
Vittal, Vikram
Shen, Weiming
Phooi Nee Yong, Melanie
Jacob, Jemima
Parchuru, Sravanthi
Dhanuskodi, Kalpana
Eyring, Kenneth
Agrawal, Pooja
Agarwal, Smita
Shanmugam, Ashwini
Gupta, Satish
Vishwanath, Divya
Kumari, Kiran
Hariharan, Arun K.
Balaji, Sai A.
Liang, Qiaoling
Robolledo, Belen
Gauribidanur Raghavendrachar, Vijayashree
Oomer Farooque, Mohammed
Buresh, Cary J.
Ramamoorthy, Preveen
Bahadur, Urvashi
Subramanian, Kalyanasundaram
Hariharan, Ramesh
Veeramachaneni, Vamsi
Sankaran, Satish
Gupta, Vaijayanti
StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title_full StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title_fullStr StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title_full_unstemmed StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title_short StrandAdvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
title_sort strandadvantage test for early‐line and advanced‐stage treatment decisions in solid tumors
topic Clinical Cancer Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430095/
https://www.ncbi.nlm.nih.gov/pubmed/28371134
http://dx.doi.org/10.1002/cam4.1037
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