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Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance
Polyploidy in plants can bestow long-term evolutionary flexibility and resistance to biotic and abiotic stresses. The upstream activation mechanisms of salt response remain unknown. Here we integrated transcriptome, miRNA and proteome data to describe the link between abscisic acid (ABA)-effectors a...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430789/ https://www.ncbi.nlm.nih.gov/pubmed/28455522 http://dx.doi.org/10.1038/s41598-017-01360-9 |
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author | Fan, Guoqiang Wang, Limin Dong, Yanpeng Zhao, Zhenli Deng, Minjie Niu, Suyan Zhang, Xiaoshen Cao, Xibing |
author_facet | Fan, Guoqiang Wang, Limin Dong, Yanpeng Zhao, Zhenli Deng, Minjie Niu, Suyan Zhang, Xiaoshen Cao, Xibing |
author_sort | Fan, Guoqiang |
collection | PubMed |
description | Polyploidy in plants can bestow long-term evolutionary flexibility and resistance to biotic and abiotic stresses. The upstream activation mechanisms of salt response remain unknown. Here we integrated transcriptome, miRNA and proteome data to describe the link between abscisic acid (ABA)-effectors and salt resistance against the background of Paulownia genome. Combing GO and KEGG pathway annotation of differentially expressed genes and proteins, as well as differentially expressed miRNA, these results reflect endogenous signal ABA activate the downstream effectors, such as ion channel effectors and oxido-reduction effectors, to maintain the homeostasis of Paulownia’s growth. The cascaded metabolic network involved ABA biosynthesis, signaling transduction and the response of effectors. Our results will contribute to a comprehensive understanding of the genetic basis of salt tolerance, which may help to expand the available arable land for P. fortunei cultivation. |
format | Online Article Text |
id | pubmed-5430789 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54307892017-05-16 Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance Fan, Guoqiang Wang, Limin Dong, Yanpeng Zhao, Zhenli Deng, Minjie Niu, Suyan Zhang, Xiaoshen Cao, Xibing Sci Rep Article Polyploidy in plants can bestow long-term evolutionary flexibility and resistance to biotic and abiotic stresses. The upstream activation mechanisms of salt response remain unknown. Here we integrated transcriptome, miRNA and proteome data to describe the link between abscisic acid (ABA)-effectors and salt resistance against the background of Paulownia genome. Combing GO and KEGG pathway annotation of differentially expressed genes and proteins, as well as differentially expressed miRNA, these results reflect endogenous signal ABA activate the downstream effectors, such as ion channel effectors and oxido-reduction effectors, to maintain the homeostasis of Paulownia’s growth. The cascaded metabolic network involved ABA biosynthesis, signaling transduction and the response of effectors. Our results will contribute to a comprehensive understanding of the genetic basis of salt tolerance, which may help to expand the available arable land for P. fortunei cultivation. Nature Publishing Group UK 2017-04-28 /pmc/articles/PMC5430789/ /pubmed/28455522 http://dx.doi.org/10.1038/s41598-017-01360-9 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Fan, Guoqiang Wang, Limin Dong, Yanpeng Zhao, Zhenli Deng, Minjie Niu, Suyan Zhang, Xiaoshen Cao, Xibing Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title | Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title_full | Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title_fullStr | Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title_full_unstemmed | Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title_short | Genome of Paulownia (Paulownia fortunei) illuminates the related transcripts, miRNA and proteins for salt resistance |
title_sort | genome of paulownia (paulownia fortunei) illuminates the related transcripts, mirna and proteins for salt resistance |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430789/ https://www.ncbi.nlm.nih.gov/pubmed/28455522 http://dx.doi.org/10.1038/s41598-017-01360-9 |
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