Cargando…

Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013

BACKGROUND: Bacillus cereus is well known as a gastrointestinal pathogen that causes food-borne illness. In the present study, we sequenced the complete genome of B. cereus FORC_013 isolated from fried eel in South Korea. To extend our understanding of the genomic characteristics of FORC_013, we con...

Descripción completa

Detalles Bibliográficos
Autores principales: Koo, Hyun-Jin, Ahn, Sojin, Chung, Han Young, Kim, Suyeon, Kim, Kwondo, Ryu, Sangryeol, Lee, Ju-Hoon, Choi, Sang Ho, Kim, Heebal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433235/
https://www.ncbi.nlm.nih.gov/pubmed/28515790
http://dx.doi.org/10.1186/s13099-017-0175-z
_version_ 1783236811979489280
author Koo, Hyun-Jin
Ahn, Sojin
Chung, Han Young
Kim, Suyeon
Kim, Kwondo
Ryu, Sangryeol
Lee, Ju-Hoon
Choi, Sang Ho
Kim, Heebal
author_facet Koo, Hyun-Jin
Ahn, Sojin
Chung, Han Young
Kim, Suyeon
Kim, Kwondo
Ryu, Sangryeol
Lee, Ju-Hoon
Choi, Sang Ho
Kim, Heebal
author_sort Koo, Hyun-Jin
collection PubMed
description BACKGROUND: Bacillus cereus is well known as a gastrointestinal pathogen that causes food-borne illness. In the present study, we sequenced the complete genome of B. cereus FORC_013 isolated from fried eel in South Korea. To extend our understanding of the genomic characteristics of FORC_013, we conducted a comparative analysis with the published genomes of other B. cereus strains. RESULTS: We fully assembled the single circular chromosome (5,418,913 bp) and one plasmid (259,749 bp); 5511 open reading frames (ORFs) and 283 ORFs were predicted for the chromosome and plasmid, respectively. Moreover, we detected that the enterotoxin (NHE, HBL, CytK) induces food-borne illness with diarrheal symptom, and that the pleiotropic regulator, along with other virulence factors, plays a role in surviving and biofilm formation. Through comparative analysis using the complete genome sequence of B. cereus FORC_013, we identified both positively selected genes related to virulence regulation and 224 strain-specific genes of FORC_013. CONCLUSIONS: Through genome analysis of B. cereus FORC_013, we identified multiple virulence factors that may contribute to pathogenicity. These results will provide insight into further studies regarding B. cereus pathogenesis mechanism at the genomic level. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13099-017-0175-z) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-5433235
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-54332352017-05-17 Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013 Koo, Hyun-Jin Ahn, Sojin Chung, Han Young Kim, Suyeon Kim, Kwondo Ryu, Sangryeol Lee, Ju-Hoon Choi, Sang Ho Kim, Heebal Gut Pathog Genome Report BACKGROUND: Bacillus cereus is well known as a gastrointestinal pathogen that causes food-borne illness. In the present study, we sequenced the complete genome of B. cereus FORC_013 isolated from fried eel in South Korea. To extend our understanding of the genomic characteristics of FORC_013, we conducted a comparative analysis with the published genomes of other B. cereus strains. RESULTS: We fully assembled the single circular chromosome (5,418,913 bp) and one plasmid (259,749 bp); 5511 open reading frames (ORFs) and 283 ORFs were predicted for the chromosome and plasmid, respectively. Moreover, we detected that the enterotoxin (NHE, HBL, CytK) induces food-borne illness with diarrheal symptom, and that the pleiotropic regulator, along with other virulence factors, plays a role in surviving and biofilm formation. Through comparative analysis using the complete genome sequence of B. cereus FORC_013, we identified both positively selected genes related to virulence regulation and 224 strain-specific genes of FORC_013. CONCLUSIONS: Through genome analysis of B. cereus FORC_013, we identified multiple virulence factors that may contribute to pathogenicity. These results will provide insight into further studies regarding B. cereus pathogenesis mechanism at the genomic level. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13099-017-0175-z) contains supplementary material, which is available to authorized users. BioMed Central 2017-05-15 /pmc/articles/PMC5433235/ /pubmed/28515790 http://dx.doi.org/10.1186/s13099-017-0175-z Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Genome Report
Koo, Hyun-Jin
Ahn, Sojin
Chung, Han Young
Kim, Suyeon
Kim, Kwondo
Ryu, Sangryeol
Lee, Ju-Hoon
Choi, Sang Ho
Kim, Heebal
Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title_full Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title_fullStr Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title_full_unstemmed Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title_short Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
title_sort comparative genomic analysis reveals genetic features related to the virulence of bacillus cereus forc_013
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433235/
https://www.ncbi.nlm.nih.gov/pubmed/28515790
http://dx.doi.org/10.1186/s13099-017-0175-z
work_keys_str_mv AT koohyunjin comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT ahnsojin comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT chunghanyoung comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT kimsuyeon comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT kimkwondo comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT ryusangryeol comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT leejuhoon comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT choisangho comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013
AT kimheebal comparativegenomicanalysisrevealsgeneticfeaturesrelatedtothevirulenceofbacilluscereusforc013