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Biological Web Service Repositories Review
Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the reposit...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5434852/ https://www.ncbi.nlm.nih.gov/pubmed/27783459 http://dx.doi.org/10.1002/minf.201600035 |
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author | Urdidiales‐Nieto, David Navas‐Delgado, Ismael Aldana‐Montes, José F. |
author_facet | Urdidiales‐Nieto, David Navas‐Delgado, Ismael Aldana‐Montes, José F. |
author_sort | Urdidiales‐Nieto, David |
collection | PubMed |
description | Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the repositories (services registered or unregistered) and at service level (annotation changes). Thus, users, software clients or workflow based approaches lack enough relevant information to decide when they should review or re‐execute a Web service or workflow to get updated or improved results. The dynamism of the repository could be a measure for workflow developers to re‐check service availability and annotation changes in the services of interest to them. This paper presents a review on the most well‐known Web service repositories in the life sciences including an analysis of their dynamism. Freshness is introduced in this paper, and has been used as the measure for the dynamism of these repositories. |
format | Online Article Text |
id | pubmed-5434852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54348522017-06-01 Biological Web Service Repositories Review Urdidiales‐Nieto, David Navas‐Delgado, Ismael Aldana‐Montes, José F. Mol Inform Minireviews Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the repositories (services registered or unregistered) and at service level (annotation changes). Thus, users, software clients or workflow based approaches lack enough relevant information to decide when they should review or re‐execute a Web service or workflow to get updated or improved results. The dynamism of the repository could be a measure for workflow developers to re‐check service availability and annotation changes in the services of interest to them. This paper presents a review on the most well‐known Web service repositories in the life sciences including an analysis of their dynamism. Freshness is introduced in this paper, and has been used as the measure for the dynamism of these repositories. John Wiley and Sons Inc. 2016-10-26 2017-05 /pmc/articles/PMC5434852/ /pubmed/27783459 http://dx.doi.org/10.1002/minf.201600035 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Minireviews Urdidiales‐Nieto, David Navas‐Delgado, Ismael Aldana‐Montes, José F. Biological Web Service Repositories Review |
title | Biological Web Service Repositories Review |
title_full | Biological Web Service Repositories Review |
title_fullStr | Biological Web Service Repositories Review |
title_full_unstemmed | Biological Web Service Repositories Review |
title_short | Biological Web Service Repositories Review |
title_sort | biological web service repositories review |
topic | Minireviews |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5434852/ https://www.ncbi.nlm.nih.gov/pubmed/27783459 http://dx.doi.org/10.1002/minf.201600035 |
work_keys_str_mv | AT urdidialesnietodavid biologicalwebservicerepositoriesreview AT navasdelgadoismael biologicalwebservicerepositoriesreview AT aldanamontesjosef biologicalwebservicerepositoriesreview |