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Biological Web Service Repositories Review

Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the reposit...

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Detalles Bibliográficos
Autores principales: Urdidiales‐Nieto, David, Navas‐Delgado, Ismael, Aldana‐Montes, José F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5434852/
https://www.ncbi.nlm.nih.gov/pubmed/27783459
http://dx.doi.org/10.1002/minf.201600035
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author Urdidiales‐Nieto, David
Navas‐Delgado, Ismael
Aldana‐Montes, José F.
author_facet Urdidiales‐Nieto, David
Navas‐Delgado, Ismael
Aldana‐Montes, José F.
author_sort Urdidiales‐Nieto, David
collection PubMed
description Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the repositories (services registered or unregistered) and at service level (annotation changes). Thus, users, software clients or workflow based approaches lack enough relevant information to decide when they should review or re‐execute a Web service or workflow to get updated or improved results. The dynamism of the repository could be a measure for workflow developers to re‐check service availability and annotation changes in the services of interest to them. This paper presents a review on the most well‐known Web service repositories in the life sciences including an analysis of their dynamism. Freshness is introduced in this paper, and has been used as the measure for the dynamism of these repositories.
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spelling pubmed-54348522017-06-01 Biological Web Service Repositories Review Urdidiales‐Nieto, David Navas‐Delgado, Ismael Aldana‐Montes, José F. Mol Inform Minireviews Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the repositories (services registered or unregistered) and at service level (annotation changes). Thus, users, software clients or workflow based approaches lack enough relevant information to decide when they should review or re‐execute a Web service or workflow to get updated or improved results. The dynamism of the repository could be a measure for workflow developers to re‐check service availability and annotation changes in the services of interest to them. This paper presents a review on the most well‐known Web service repositories in the life sciences including an analysis of their dynamism. Freshness is introduced in this paper, and has been used as the measure for the dynamism of these repositories. John Wiley and Sons Inc. 2016-10-26 2017-05 /pmc/articles/PMC5434852/ /pubmed/27783459 http://dx.doi.org/10.1002/minf.201600035 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Minireviews
Urdidiales‐Nieto, David
Navas‐Delgado, Ismael
Aldana‐Montes, José F.
Biological Web Service Repositories Review
title Biological Web Service Repositories Review
title_full Biological Web Service Repositories Review
title_fullStr Biological Web Service Repositories Review
title_full_unstemmed Biological Web Service Repositories Review
title_short Biological Web Service Repositories Review
title_sort biological web service repositories review
topic Minireviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5434852/
https://www.ncbi.nlm.nih.gov/pubmed/27783459
http://dx.doi.org/10.1002/minf.201600035
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