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Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annu...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435404/ https://www.ncbi.nlm.nih.gov/pubmed/28529831 http://dx.doi.org/10.3732/apps.1600158 |
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author | Finch, Kristen Espinoza, Edgard Jones, F. Andrew Cronn, Richard |
author_facet | Finch, Kristen Espinoza, Edgard Jones, F. Andrew Cronn, Richard |
author_sort | Finch, Kristen |
collection | PubMed |
description | PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annual ring mass spectra were obtained from 188 adult Douglas-fir trees, and these were analyzed using random forest models to determine whether samples could be classified to geographic origin, growth year, or growth year and geographic origin. Specific wood molecules that contributed to geographic discrimination were identified. RESULTS: Douglas-fir mass spectra could be differentiated into two geographic classes with an accuracy between 70% and 76%. Classification models could not accurately classify sample mass spectra based on growth year. Thirty-two molecules were identified as key for classifying western Oregon Douglas-fir wood cores to geographic origin. DISCUSSION: DART-TOFMS is capable of detecting minute but regionally informative differences in wood molecules over a small geographic scale, and these differences made it possible to predict the geographic origin of Douglas-fir wood with moderate accuracy. Studies involving DART-TOFMS, alone and in combination with other technologies, will be relevant for identifying the geographic origin of illegally harvested wood. |
format | Online Article Text |
id | pubmed-5435404 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-54354042017-05-19 Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) Finch, Kristen Espinoza, Edgard Jones, F. Andrew Cronn, Richard Appl Plant Sci Application Article PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annual ring mass spectra were obtained from 188 adult Douglas-fir trees, and these were analyzed using random forest models to determine whether samples could be classified to geographic origin, growth year, or growth year and geographic origin. Specific wood molecules that contributed to geographic discrimination were identified. RESULTS: Douglas-fir mass spectra could be differentiated into two geographic classes with an accuracy between 70% and 76%. Classification models could not accurately classify sample mass spectra based on growth year. Thirty-two molecules were identified as key for classifying western Oregon Douglas-fir wood cores to geographic origin. DISCUSSION: DART-TOFMS is capable of detecting minute but regionally informative differences in wood molecules over a small geographic scale, and these differences made it possible to predict the geographic origin of Douglas-fir wood with moderate accuracy. Studies involving DART-TOFMS, alone and in combination with other technologies, will be relevant for identifying the geographic origin of illegally harvested wood. Botanical Society of America 2017-05-12 /pmc/articles/PMC5435404/ /pubmed/28529831 http://dx.doi.org/10.3732/apps.1600158 Text en © 2017 Finch et al. Published by the Botanical Society of America https://creativecommons.org/publicdomain/zero/1.0/ This open access article is a U.S. Government work distributed under the terms of the Creative Commons Public Domain Dedication (CC0 1.0 (https://creativecommons.org/publicdomain/zero/1.0/) ). |
spellingShingle | Application Article Finch, Kristen Espinoza, Edgard Jones, F. Andrew Cronn, Richard Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title | Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title_full | Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title_fullStr | Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title_full_unstemmed | Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title_short | Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) |
title_sort | source identification of western oregon douglas-fir wood cores using mass spectrometry and random forest classification(1) |
topic | Application Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435404/ https://www.ncbi.nlm.nih.gov/pubmed/28529831 http://dx.doi.org/10.3732/apps.1600158 |
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