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Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)

PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annu...

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Detalles Bibliográficos
Autores principales: Finch, Kristen, Espinoza, Edgard, Jones, F. Andrew, Cronn, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435404/
https://www.ncbi.nlm.nih.gov/pubmed/28529831
http://dx.doi.org/10.3732/apps.1600158
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author Finch, Kristen
Espinoza, Edgard
Jones, F. Andrew
Cronn, Richard
author_facet Finch, Kristen
Espinoza, Edgard
Jones, F. Andrew
Cronn, Richard
author_sort Finch, Kristen
collection PubMed
description PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annual ring mass spectra were obtained from 188 adult Douglas-fir trees, and these were analyzed using random forest models to determine whether samples could be classified to geographic origin, growth year, or growth year and geographic origin. Specific wood molecules that contributed to geographic discrimination were identified. RESULTS: Douglas-fir mass spectra could be differentiated into two geographic classes with an accuracy between 70% and 76%. Classification models could not accurately classify sample mass spectra based on growth year. Thirty-two molecules were identified as key for classifying western Oregon Douglas-fir wood cores to geographic origin. DISCUSSION: DART-TOFMS is capable of detecting minute but regionally informative differences in wood molecules over a small geographic scale, and these differences made it possible to predict the geographic origin of Douglas-fir wood with moderate accuracy. Studies involving DART-TOFMS, alone and in combination with other technologies, will be relevant for identifying the geographic origin of illegally harvested wood.
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spelling pubmed-54354042017-05-19 Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1) Finch, Kristen Espinoza, Edgard Jones, F. Andrew Cronn, Richard Appl Plant Sci Application Article PREMISE OF THE STUDY: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. METHODS: Three annual ring mass spectra were obtained from 188 adult Douglas-fir trees, and these were analyzed using random forest models to determine whether samples could be classified to geographic origin, growth year, or growth year and geographic origin. Specific wood molecules that contributed to geographic discrimination were identified. RESULTS: Douglas-fir mass spectra could be differentiated into two geographic classes with an accuracy between 70% and 76%. Classification models could not accurately classify sample mass spectra based on growth year. Thirty-two molecules were identified as key for classifying western Oregon Douglas-fir wood cores to geographic origin. DISCUSSION: DART-TOFMS is capable of detecting minute but regionally informative differences in wood molecules over a small geographic scale, and these differences made it possible to predict the geographic origin of Douglas-fir wood with moderate accuracy. Studies involving DART-TOFMS, alone and in combination with other technologies, will be relevant for identifying the geographic origin of illegally harvested wood. Botanical Society of America 2017-05-12 /pmc/articles/PMC5435404/ /pubmed/28529831 http://dx.doi.org/10.3732/apps.1600158 Text en © 2017 Finch et al. Published by the Botanical Society of America https://creativecommons.org/publicdomain/zero/1.0/ This open access article is a U.S. Government work distributed under the terms of the Creative Commons Public Domain Dedication (CC0 1.0 (https://creativecommons.org/publicdomain/zero/1.0/) ).
spellingShingle Application Article
Finch, Kristen
Espinoza, Edgard
Jones, F. Andrew
Cronn, Richard
Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title_full Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title_fullStr Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title_full_unstemmed Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title_short Source identification of western Oregon Douglas-fir wood cores using mass spectrometry and random forest classification(1)
title_sort source identification of western oregon douglas-fir wood cores using mass spectrometry and random forest classification(1)
topic Application Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435404/
https://www.ncbi.nlm.nih.gov/pubmed/28529831
http://dx.doi.org/10.3732/apps.1600158
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