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Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed pol...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435409/ https://www.ncbi.nlm.nih.gov/pubmed/28529836 http://dx.doi.org/10.3732/apps.1700034 |
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author | Wang, Yanling Xie, Hongxian Yang, Yi Huang, Yelin Wang, Jianwu Tan, Fengxiao |
author_facet | Wang, Yanling Xie, Hongxian Yang, Yi Huang, Yelin Wang, Jianwu Tan, Fengxiao |
author_sort | Wang, Yanling |
collection | PubMed |
description | PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed polymorphisms across 89 individuals from four populations. For chloroplast loci, two to six alleles were recovered and the unbiased haploid diversity per locus ranged from 0.391 to 0.857. For mitochondrial loci, two to four alleles were recovered and the unbiased haploid diversity ranged from 0.264 to 0.740. Sixteen of the 17 screened markers could be successfully amplified in the related species M. pulchra. CONCLUSIONS: The 17 microsatellite markers developed here exhibited variation in M. pinnata and 16 presented transferability in the related species M. pulchra, suggesting that these markers will be valuable for genetic studies across M. pinnata and its related species. |
format | Online Article Text |
id | pubmed-5435409 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-54354092017-05-19 Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) Wang, Yanling Xie, Hongxian Yang, Yi Huang, Yelin Wang, Jianwu Tan, Fengxiao Appl Plant Sci Primer Note PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed polymorphisms across 89 individuals from four populations. For chloroplast loci, two to six alleles were recovered and the unbiased haploid diversity per locus ranged from 0.391 to 0.857. For mitochondrial loci, two to four alleles were recovered and the unbiased haploid diversity ranged from 0.264 to 0.740. Sixteen of the 17 screened markers could be successfully amplified in the related species M. pulchra. CONCLUSIONS: The 17 microsatellite markers developed here exhibited variation in M. pinnata and 16 presented transferability in the related species M. pulchra, suggesting that these markers will be valuable for genetic studies across M. pinnata and its related species. Botanical Society of America 2017-05-12 /pmc/articles/PMC5435409/ /pubmed/28529836 http://dx.doi.org/10.3732/apps.1700034 Text en © 2017 Wang et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Wang, Yanling Xie, Hongxian Yang, Yi Huang, Yelin Wang, Jianwu Tan, Fengxiao Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title | Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title_full | Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title_fullStr | Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title_full_unstemmed | Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title_short | Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) |
title_sort | chloroplast and mitochondrial microsatellites for millettia pinnata (fabaceae) and cross-amplification in related species(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435409/ https://www.ncbi.nlm.nih.gov/pubmed/28529836 http://dx.doi.org/10.3732/apps.1700034 |
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