Cargando…

Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)

PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed pol...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Yanling, Xie, Hongxian, Yang, Yi, Huang, Yelin, Wang, Jianwu, Tan, Fengxiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435409/
https://www.ncbi.nlm.nih.gov/pubmed/28529836
http://dx.doi.org/10.3732/apps.1700034
_version_ 1783237227019501568
author Wang, Yanling
Xie, Hongxian
Yang, Yi
Huang, Yelin
Wang, Jianwu
Tan, Fengxiao
author_facet Wang, Yanling
Xie, Hongxian
Yang, Yi
Huang, Yelin
Wang, Jianwu
Tan, Fengxiao
author_sort Wang, Yanling
collection PubMed
description PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed polymorphisms across 89 individuals from four populations. For chloroplast loci, two to six alleles were recovered and the unbiased haploid diversity per locus ranged from 0.391 to 0.857. For mitochondrial loci, two to four alleles were recovered and the unbiased haploid diversity ranged from 0.264 to 0.740. Sixteen of the 17 screened markers could be successfully amplified in the related species M. pulchra. CONCLUSIONS: The 17 microsatellite markers developed here exhibited variation in M. pinnata and 16 presented transferability in the related species M. pulchra, suggesting that these markers will be valuable for genetic studies across M. pinnata and its related species.
format Online
Article
Text
id pubmed-5435409
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-54354092017-05-19 Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1) Wang, Yanling Xie, Hongxian Yang, Yi Huang, Yelin Wang, Jianwu Tan, Fengxiao Appl Plant Sci Primer Note PREMISE OF THE STUDY: Chloroplast and mitochondrial microsatellites were identified to study the population genetics of Millettia pinnata (Fabaceae). METHODS AND RESULTS: Based on publicly available plastid genome sequence data of M. pinnata, 42 primer pairs were developed, of which 17 displayed polymorphisms across 89 individuals from four populations. For chloroplast loci, two to six alleles were recovered and the unbiased haploid diversity per locus ranged from 0.391 to 0.857. For mitochondrial loci, two to four alleles were recovered and the unbiased haploid diversity ranged from 0.264 to 0.740. Sixteen of the 17 screened markers could be successfully amplified in the related species M. pulchra. CONCLUSIONS: The 17 microsatellite markers developed here exhibited variation in M. pinnata and 16 presented transferability in the related species M. pulchra, suggesting that these markers will be valuable for genetic studies across M. pinnata and its related species. Botanical Society of America 2017-05-12 /pmc/articles/PMC5435409/ /pubmed/28529836 http://dx.doi.org/10.3732/apps.1700034 Text en © 2017 Wang et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Wang, Yanling
Xie, Hongxian
Yang, Yi
Huang, Yelin
Wang, Jianwu
Tan, Fengxiao
Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title_full Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title_fullStr Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title_full_unstemmed Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title_short Chloroplast and mitochondrial microsatellites for Millettia pinnata (Fabaceae) and cross-amplification in related species(1)
title_sort chloroplast and mitochondrial microsatellites for millettia pinnata (fabaceae) and cross-amplification in related species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435409/
https://www.ncbi.nlm.nih.gov/pubmed/28529836
http://dx.doi.org/10.3732/apps.1700034
work_keys_str_mv AT wangyanling chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1
AT xiehongxian chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1
AT yangyi chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1
AT huangyelin chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1
AT wangjianwu chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1
AT tanfengxiao chloroplastandmitochondrialmicrosatellitesformillettiapinnatafabaceaeandcrossamplificationinrelatedspecies1