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Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor

Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) ar...

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Autores principales: Nazaruddin, Nazaruddin, Samad, Abdul Fatah A., Sajad, Muhammad, Jani, Jaeyres, Zainal, Zamri, Ismail, Ismanizan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435574/
https://www.ncbi.nlm.nih.gov/pubmed/28560166
http://dx.doi.org/10.1016/j.gdata.2017.05.011
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author Nazaruddin, Nazaruddin
Samad, Abdul Fatah A.
Sajad, Muhammad
Jani, Jaeyres
Zainal, Zamri
Ismail, Ismanizan
author_facet Nazaruddin, Nazaruddin
Samad, Abdul Fatah A.
Sajad, Muhammad
Jani, Jaeyres
Zainal, Zamri
Ismail, Ismanizan
author_sort Nazaruddin, Nazaruddin
collection PubMed
description Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) are small RNAs that play important regulatory roles in various biological processes. In order to explore the possible role of miRNA in the regulation of these phytohormones signaling pathway and uncovering their potential correlation, we, for the first time, have generated the smallRNA library of Kesum plant. The library was developed in response to methyl jasmonate (MJ) and abscisic acid (ABA) treatment by using next-generation sequencing technology. Raw reads have been deposited to SRA database with the accession numbers, SRX2655642 and SRX2655643 (MJ-treated), SRXSRX2655644 and SRX2655645 (ABA-treated) and SRX2655646and SRX2655647 (Control).
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spelling pubmed-54355742017-05-30 Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor Nazaruddin, Nazaruddin Samad, Abdul Fatah A. Sajad, Muhammad Jani, Jaeyres Zainal, Zamri Ismail, Ismanizan Genom Data Data in Brief Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) are small RNAs that play important regulatory roles in various biological processes. In order to explore the possible role of miRNA in the regulation of these phytohormones signaling pathway and uncovering their potential correlation, we, for the first time, have generated the smallRNA library of Kesum plant. The library was developed in response to methyl jasmonate (MJ) and abscisic acid (ABA) treatment by using next-generation sequencing technology. Raw reads have been deposited to SRA database with the accession numbers, SRX2655642 and SRX2655643 (MJ-treated), SRXSRX2655644 and SRX2655645 (ABA-treated) and SRX2655646and SRX2655647 (Control). Elsevier 2017-05-12 /pmc/articles/PMC5435574/ /pubmed/28560166 http://dx.doi.org/10.1016/j.gdata.2017.05.011 Text en © 2017 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Nazaruddin, Nazaruddin
Samad, Abdul Fatah A.
Sajad, Muhammad
Jani, Jaeyres
Zainal, Zamri
Ismail, Ismanizan
Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title_full Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title_fullStr Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title_full_unstemmed Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title_short Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
title_sort small rna-seq analysis in response to methyl jasmonate and abscisic acid treatment in persicaria minor
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435574/
https://www.ncbi.nlm.nih.gov/pubmed/28560166
http://dx.doi.org/10.1016/j.gdata.2017.05.011
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