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Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) ar...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435574/ https://www.ncbi.nlm.nih.gov/pubmed/28560166 http://dx.doi.org/10.1016/j.gdata.2017.05.011 |
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author | Nazaruddin, Nazaruddin Samad, Abdul Fatah A. Sajad, Muhammad Jani, Jaeyres Zainal, Zamri Ismail, Ismanizan |
author_facet | Nazaruddin, Nazaruddin Samad, Abdul Fatah A. Sajad, Muhammad Jani, Jaeyres Zainal, Zamri Ismail, Ismanizan |
author_sort | Nazaruddin, Nazaruddin |
collection | PubMed |
description | Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) are small RNAs that play important regulatory roles in various biological processes. In order to explore the possible role of miRNA in the regulation of these phytohormones signaling pathway and uncovering their potential correlation, we, for the first time, have generated the smallRNA library of Kesum plant. The library was developed in response to methyl jasmonate (MJ) and abscisic acid (ABA) treatment by using next-generation sequencing technology. Raw reads have been deposited to SRA database with the accession numbers, SRX2655642 and SRX2655643 (MJ-treated), SRXSRX2655644 and SRX2655645 (ABA-treated) and SRX2655646and SRX2655647 (Control). |
format | Online Article Text |
id | pubmed-5435574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-54355742017-05-30 Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor Nazaruddin, Nazaruddin Samad, Abdul Fatah A. Sajad, Muhammad Jani, Jaeyres Zainal, Zamri Ismail, Ismanizan Genom Data Data in Brief Persicaria minor (Kesum) is an important medicinal plant with high level of secondary metabolite contents, especially, terpenoids and flavonoids. Previous studies have revealed that application of exogenous phytohormone could increase secondary metabolite contents of the plant. MicroRNAs (miRNAs) are small RNAs that play important regulatory roles in various biological processes. In order to explore the possible role of miRNA in the regulation of these phytohormones signaling pathway and uncovering their potential correlation, we, for the first time, have generated the smallRNA library of Kesum plant. The library was developed in response to methyl jasmonate (MJ) and abscisic acid (ABA) treatment by using next-generation sequencing technology. Raw reads have been deposited to SRA database with the accession numbers, SRX2655642 and SRX2655643 (MJ-treated), SRXSRX2655644 and SRX2655645 (ABA-treated) and SRX2655646and SRX2655647 (Control). Elsevier 2017-05-12 /pmc/articles/PMC5435574/ /pubmed/28560166 http://dx.doi.org/10.1016/j.gdata.2017.05.011 Text en © 2017 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data in Brief Nazaruddin, Nazaruddin Samad, Abdul Fatah A. Sajad, Muhammad Jani, Jaeyres Zainal, Zamri Ismail, Ismanizan Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title | Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title_full | Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title_fullStr | Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title_full_unstemmed | Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title_short | Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor |
title_sort | small rna-seq analysis in response to methyl jasmonate and abscisic acid treatment in persicaria minor |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435574/ https://www.ncbi.nlm.nih.gov/pubmed/28560166 http://dx.doi.org/10.1016/j.gdata.2017.05.011 |
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