Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)

Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-cod...

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Autores principales: Grenville-Briggs, Laura J., Kushwaha, Sandeep K., Cleary, Michelle R., Witzell, Johanna, Savenkov, Eugene I., Whisson, Stephen C., Chawade, Aakash, Vetukuri, Ramesh R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Data in Brief Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435576/
https://www.ncbi.nlm.nih.gov/pubmed/28560165
http://dx.doi.org/10.1016/j.gdata.2017.05.010
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author Grenville-Briggs, Laura J.
Kushwaha, Sandeep K.
Cleary, Michelle R.
Witzell, Johanna
Savenkov, Eugene I.
Whisson, Stephen C.
Chawade, Aakash
Vetukuri, Ramesh R.
author_facet Grenville-Briggs, Laura J.
Kushwaha, Sandeep K.
Cleary, Michelle R.
Witzell, Johanna
Savenkov, Eugene I.
Whisson, Stephen C.
Chawade, Aakash
Vetukuri, Ramesh R.
author_sort Grenville-Briggs, Laura J.
collection PubMed
description Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.
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spelling pubmed-54355762017-05-30 Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica) Grenville-Briggs, Laura J. Kushwaha, Sandeep K. Cleary, Michelle R. Witzell, Johanna Savenkov, Eugene I. Whisson, Stephen C. Chawade, Aakash Vetukuri, Ramesh R. Genom Data Data in Brief Article Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000. Elsevier 2017-05-12 /pmc/articles/PMC5435576/ /pubmed/28560165 http://dx.doi.org/10.1016/j.gdata.2017.05.010 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief Article
Grenville-Briggs, Laura J.
Kushwaha, Sandeep K.
Cleary, Michelle R.
Witzell, Johanna
Savenkov, Eugene I.
Whisson, Stephen C.
Chawade, Aakash
Vetukuri, Ramesh R.
Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title_full Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title_fullStr Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title_full_unstemmed Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title_short Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)
title_sort draft genome of the oomycete pathogen phytophthora cactorum strain lv007 isolated from european beech (fagus sylvatica)
topic Data in Brief Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435576/
https://www.ncbi.nlm.nih.gov/pubmed/28560165
http://dx.doi.org/10.1016/j.gdata.2017.05.010
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