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Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets
Hierarchical organizations of information processing in the brain networks have been known to exist and widely studied. To find proper hierarchical structures in the macaque brain, the traditional methods need the entire pairwise hierarchical relationships between cortical areas. In this paper, we p...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5436673/ https://www.ncbi.nlm.nih.gov/pubmed/28545042 http://dx.doi.org/10.1371/journal.pone.0177373 |
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author | Lim, Woosang Lee, Jungsoo Lim, Yongsub Bae, Doo-Hwan Park, Haesun Kim, Dae-Shik Jung, Kyomin |
author_facet | Lim, Woosang Lee, Jungsoo Lim, Yongsub Bae, Doo-Hwan Park, Haesun Kim, Dae-Shik Jung, Kyomin |
author_sort | Lim, Woosang |
collection | PubMed |
description | Hierarchical organizations of information processing in the brain networks have been known to exist and widely studied. To find proper hierarchical structures in the macaque brain, the traditional methods need the entire pairwise hierarchical relationships between cortical areas. In this paper, we present a new method that discovers hierarchical structures of macaque brain networks by using partial information of pairwise hierarchical relationships. Our method uses a graph-based manifold learning to exploit inherent relationship, and computes pseudo distances of hierarchical levels for every pair of cortical areas. Then, we compute hierarchy levels of all cortical areas by minimizing the sum of squared hierarchical distance errors with the hierarchical information of few cortical areas. We evaluate our method on the macaque brain data sets whose true hierarchical levels are known as the FV91 model. The experimental results show that hierarchy levels computed by our method are similar to the FV91 model, and its errors are much smaller than the errors of hierarchical clustering approaches. |
format | Online Article Text |
id | pubmed-5436673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54366732017-05-27 Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets Lim, Woosang Lee, Jungsoo Lim, Yongsub Bae, Doo-Hwan Park, Haesun Kim, Dae-Shik Jung, Kyomin PLoS One Research Article Hierarchical organizations of information processing in the brain networks have been known to exist and widely studied. To find proper hierarchical structures in the macaque brain, the traditional methods need the entire pairwise hierarchical relationships between cortical areas. In this paper, we present a new method that discovers hierarchical structures of macaque brain networks by using partial information of pairwise hierarchical relationships. Our method uses a graph-based manifold learning to exploit inherent relationship, and computes pseudo distances of hierarchical levels for every pair of cortical areas. Then, we compute hierarchy levels of all cortical areas by minimizing the sum of squared hierarchical distance errors with the hierarchical information of few cortical areas. We evaluate our method on the macaque brain data sets whose true hierarchical levels are known as the FV91 model. The experimental results show that hierarchy levels computed by our method are similar to the FV91 model, and its errors are much smaller than the errors of hierarchical clustering approaches. Public Library of Science 2017-05-18 /pmc/articles/PMC5436673/ /pubmed/28545042 http://dx.doi.org/10.1371/journal.pone.0177373 Text en © 2017 Lim et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lim, Woosang Lee, Jungsoo Lim, Yongsub Bae, Doo-Hwan Park, Haesun Kim, Dae-Shik Jung, Kyomin Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title | Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title_full | Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title_fullStr | Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title_full_unstemmed | Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title_short | Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
title_sort | hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5436673/ https://www.ncbi.nlm.nih.gov/pubmed/28545042 http://dx.doi.org/10.1371/journal.pone.0177373 |
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