Cargando…

Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning

The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement...

Descripción completa

Detalles Bibliográficos
Autores principales: Esmaeili, Mahdad, Dehnavi, Alireza Mehri, Rabbani, Hossein, Hajizadeh, Fedra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437767/
https://www.ncbi.nlm.nih.gov/pubmed/28553581
_version_ 1783237655538958336
author Esmaeili, Mahdad
Dehnavi, Alireza Mehri
Rabbani, Hossein
Hajizadeh, Fedra
author_facet Esmaeili, Mahdad
Dehnavi, Alireza Mehri
Rabbani, Hossein
Hajizadeh, Fedra
author_sort Esmaeili, Mahdad
collection PubMed
description The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement of intra-retinal layers of 2D spectral-domain OCT images. For this purpose, we take curvelet transform of the noisy image. In the next step, noisy sub-bands of different scales and rotations are separately thresholded with an adaptive data-driven thresholding method, then, each thresholded sub-band is denoised based on K-SVD dictionary learning with a variable size initial dictionary dependent on the size of curvelet coefficients’ matrix in each sub-band. We also modify each coefficient matrix to enhance intra-retinal layers, with noise suppression at the same time. We demonstrate the ability of the proposed algorithm in speckle noise reduction of 100 publically available OCT B-scans with and without non-neovascular age-related macular degeneration (AMD), and improvement of contrast-to-noise ratio from 1.27 to 5.12 and mean-to-standard deviation ratio from 3.20 to 14.41 are obtained.
format Online
Article
Text
id pubmed-5437767
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Medknow Publications & Media Pvt Ltd
record_format MEDLINE/PubMed
spelling pubmed-54377672017-05-26 Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning Esmaeili, Mahdad Dehnavi, Alireza Mehri Rabbani, Hossein Hajizadeh, Fedra J Med Signals Sens Original Article The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement of intra-retinal layers of 2D spectral-domain OCT images. For this purpose, we take curvelet transform of the noisy image. In the next step, noisy sub-bands of different scales and rotations are separately thresholded with an adaptive data-driven thresholding method, then, each thresholded sub-band is denoised based on K-SVD dictionary learning with a variable size initial dictionary dependent on the size of curvelet coefficients’ matrix in each sub-band. We also modify each coefficient matrix to enhance intra-retinal layers, with noise suppression at the same time. We demonstrate the ability of the proposed algorithm in speckle noise reduction of 100 publically available OCT B-scans with and without non-neovascular age-related macular degeneration (AMD), and improvement of contrast-to-noise ratio from 1.27 to 5.12 and mean-to-standard deviation ratio from 3.20 to 14.41 are obtained. Medknow Publications & Media Pvt Ltd 2017 /pmc/articles/PMC5437767/ /pubmed/28553581 Text en Copyright: © 2017 Journal of Medical Signals & Sensors http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms.
spellingShingle Original Article
Esmaeili, Mahdad
Dehnavi, Alireza Mehri
Rabbani, Hossein
Hajizadeh, Fedra
Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title_full Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title_fullStr Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title_full_unstemmed Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title_short Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
title_sort speckle noise reduction in optical coherence tomography using two-dimensional curvelet-based dictionary learning
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437767/
https://www.ncbi.nlm.nih.gov/pubmed/28553581
work_keys_str_mv AT esmaeilimahdad specklenoisereductioninopticalcoherencetomographyusingtwodimensionalcurveletbaseddictionarylearning
AT dehnavialirezamehri specklenoisereductioninopticalcoherencetomographyusingtwodimensionalcurveletbaseddictionarylearning
AT rabbanihossein specklenoisereductioninopticalcoherencetomographyusingtwodimensionalcurveletbaseddictionarylearning
AT hajizadehfedra specklenoisereductioninopticalcoherencetomographyusingtwodimensionalcurveletbaseddictionarylearning