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Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning
The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437767/ https://www.ncbi.nlm.nih.gov/pubmed/28553581 |
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author | Esmaeili, Mahdad Dehnavi, Alireza Mehri Rabbani, Hossein Hajizadeh, Fedra |
author_facet | Esmaeili, Mahdad Dehnavi, Alireza Mehri Rabbani, Hossein Hajizadeh, Fedra |
author_sort | Esmaeili, Mahdad |
collection | PubMed |
description | The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement of intra-retinal layers of 2D spectral-domain OCT images. For this purpose, we take curvelet transform of the noisy image. In the next step, noisy sub-bands of different scales and rotations are separately thresholded with an adaptive data-driven thresholding method, then, each thresholded sub-band is denoised based on K-SVD dictionary learning with a variable size initial dictionary dependent on the size of curvelet coefficients’ matrix in each sub-band. We also modify each coefficient matrix to enhance intra-retinal layers, with noise suppression at the same time. We demonstrate the ability of the proposed algorithm in speckle noise reduction of 100 publically available OCT B-scans with and without non-neovascular age-related macular degeneration (AMD), and improvement of contrast-to-noise ratio from 1.27 to 5.12 and mean-to-standard deviation ratio from 3.20 to 14.41 are obtained. |
format | Online Article Text |
id | pubmed-5437767 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-54377672017-05-26 Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning Esmaeili, Mahdad Dehnavi, Alireza Mehri Rabbani, Hossein Hajizadeh, Fedra J Med Signals Sens Original Article The process of interpretation of high-speed optical coherence tomography (OCT) images is restricted due to the large speckle noise. To address this problem, this paper proposes a new method using two-dimensional (2D) curvelet-based K-SVD algorithm for speckle noise reduction and contrast enhancement of intra-retinal layers of 2D spectral-domain OCT images. For this purpose, we take curvelet transform of the noisy image. In the next step, noisy sub-bands of different scales and rotations are separately thresholded with an adaptive data-driven thresholding method, then, each thresholded sub-band is denoised based on K-SVD dictionary learning with a variable size initial dictionary dependent on the size of curvelet coefficients’ matrix in each sub-band. We also modify each coefficient matrix to enhance intra-retinal layers, with noise suppression at the same time. We demonstrate the ability of the proposed algorithm in speckle noise reduction of 100 publically available OCT B-scans with and without non-neovascular age-related macular degeneration (AMD), and improvement of contrast-to-noise ratio from 1.27 to 5.12 and mean-to-standard deviation ratio from 3.20 to 14.41 are obtained. Medknow Publications & Media Pvt Ltd 2017 /pmc/articles/PMC5437767/ /pubmed/28553581 Text en Copyright: © 2017 Journal of Medical Signals & Sensors http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Esmaeili, Mahdad Dehnavi, Alireza Mehri Rabbani, Hossein Hajizadeh, Fedra Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title | Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title_full | Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title_fullStr | Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title_full_unstemmed | Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title_short | Speckle Noise Reduction in Optical Coherence Tomography Using Two-dimensional Curvelet-based Dictionary Learning |
title_sort | speckle noise reduction in optical coherence tomography using two-dimensional curvelet-based dictionary learning |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437767/ https://www.ncbi.nlm.nih.gov/pubmed/28553581 |
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