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The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma

We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cycli...

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Autores principales: Stein, Caleb K., Pawlyn, Charlotte, Chavan, Shweta, Rasche, Leo, Weinhold, Niels, Corken, Adam, Buros, Amy, Sonneveld, Pieter, Jackson, Graham H., Landgren, Ola, Mughal, Tariq, He, Jie, Barlogie, Bart, Bergsagel, P. Leif, Davies, Faith E., Walker, Brian A., Morgan, Gareth J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438613/
https://www.ncbi.nlm.nih.gov/pubmed/28427158
http://dx.doi.org/10.18632/oncotarget.15718
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author Stein, Caleb K.
Pawlyn, Charlotte
Chavan, Shweta
Rasche, Leo
Weinhold, Niels
Corken, Adam
Buros, Amy
Sonneveld, Pieter
Jackson, Graham H.
Landgren, Ola
Mughal, Tariq
He, Jie
Barlogie, Bart
Bergsagel, P. Leif
Davies, Faith E.
Walker, Brian A.
Morgan, Gareth J.
author_facet Stein, Caleb K.
Pawlyn, Charlotte
Chavan, Shweta
Rasche, Leo
Weinhold, Niels
Corken, Adam
Buros, Amy
Sonneveld, Pieter
Jackson, Graham H.
Landgren, Ola
Mughal, Tariq
He, Jie
Barlogie, Bart
Bergsagel, P. Leif
Davies, Faith E.
Walker, Brian A.
Morgan, Gareth J.
author_sort Stein, Caleb K.
collection PubMed
description We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cyclin D (TC) molecular subgroups. The spectrum of KRAS, NRAS, and BRAF codon mutations varied across subgroups with NRAS mutations at Q61 codon being common in hyperdiploid (HRD) and t(11;14) myeloma while being rare in MMSET and MAF. In addition, the presence of RAS-RAF mutations was inversely associated with NFκB pathway activation in all subgroups excluding MAF. In the MMSET subgroup, cases with low FGFR3 expression frequently had RAS-RAF mutations. Conditional inference tree analysis determined that mutation and homozygous deletion of TP53, CDKN2C, and RB1 were key prognostic factors associated with adverse outcome in a non-relapse clinical setting. In conclusion, this study highlights the heterogeneity in the distribution and clinical outcomes of RAS codon and other mutations in multiple myeloma dependent upon primary molecular subgroup.
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spelling pubmed-54386132017-05-24 The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma Stein, Caleb K. Pawlyn, Charlotte Chavan, Shweta Rasche, Leo Weinhold, Niels Corken, Adam Buros, Amy Sonneveld, Pieter Jackson, Graham H. Landgren, Ola Mughal, Tariq He, Jie Barlogie, Bart Bergsagel, P. Leif Davies, Faith E. Walker, Brian A. Morgan, Gareth J. Oncotarget Research Paper We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cyclin D (TC) molecular subgroups. The spectrum of KRAS, NRAS, and BRAF codon mutations varied across subgroups with NRAS mutations at Q61 codon being common in hyperdiploid (HRD) and t(11;14) myeloma while being rare in MMSET and MAF. In addition, the presence of RAS-RAF mutations was inversely associated with NFκB pathway activation in all subgroups excluding MAF. In the MMSET subgroup, cases with low FGFR3 expression frequently had RAS-RAF mutations. Conditional inference tree analysis determined that mutation and homozygous deletion of TP53, CDKN2C, and RB1 were key prognostic factors associated with adverse outcome in a non-relapse clinical setting. In conclusion, this study highlights the heterogeneity in the distribution and clinical outcomes of RAS codon and other mutations in multiple myeloma dependent upon primary molecular subgroup. Impact Journals LLC 2017-02-24 /pmc/articles/PMC5438613/ /pubmed/28427158 http://dx.doi.org/10.18632/oncotarget.15718 Text en Copyright: © 2017 Stein et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Stein, Caleb K.
Pawlyn, Charlotte
Chavan, Shweta
Rasche, Leo
Weinhold, Niels
Corken, Adam
Buros, Amy
Sonneveld, Pieter
Jackson, Graham H.
Landgren, Ola
Mughal, Tariq
He, Jie
Barlogie, Bart
Bergsagel, P. Leif
Davies, Faith E.
Walker, Brian A.
Morgan, Gareth J.
The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title_full The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title_fullStr The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title_full_unstemmed The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title_short The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
title_sort varied distribution and impact of ras codon and other key dna alterations across the translocation cyclin d subgroups in multiple myeloma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438613/
https://www.ncbi.nlm.nih.gov/pubmed/28427158
http://dx.doi.org/10.18632/oncotarget.15718
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