Cargando…
The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma
We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cycli...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438613/ https://www.ncbi.nlm.nih.gov/pubmed/28427158 http://dx.doi.org/10.18632/oncotarget.15718 |
_version_ | 1783237801845719040 |
---|---|
author | Stein, Caleb K. Pawlyn, Charlotte Chavan, Shweta Rasche, Leo Weinhold, Niels Corken, Adam Buros, Amy Sonneveld, Pieter Jackson, Graham H. Landgren, Ola Mughal, Tariq He, Jie Barlogie, Bart Bergsagel, P. Leif Davies, Faith E. Walker, Brian A. Morgan, Gareth J. |
author_facet | Stein, Caleb K. Pawlyn, Charlotte Chavan, Shweta Rasche, Leo Weinhold, Niels Corken, Adam Buros, Amy Sonneveld, Pieter Jackson, Graham H. Landgren, Ola Mughal, Tariq He, Jie Barlogie, Bart Bergsagel, P. Leif Davies, Faith E. Walker, Brian A. Morgan, Gareth J. |
author_sort | Stein, Caleb K. |
collection | PubMed |
description | We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cyclin D (TC) molecular subgroups. The spectrum of KRAS, NRAS, and BRAF codon mutations varied across subgroups with NRAS mutations at Q61 codon being common in hyperdiploid (HRD) and t(11;14) myeloma while being rare in MMSET and MAF. In addition, the presence of RAS-RAF mutations was inversely associated with NFκB pathway activation in all subgroups excluding MAF. In the MMSET subgroup, cases with low FGFR3 expression frequently had RAS-RAF mutations. Conditional inference tree analysis determined that mutation and homozygous deletion of TP53, CDKN2C, and RB1 were key prognostic factors associated with adverse outcome in a non-relapse clinical setting. In conclusion, this study highlights the heterogeneity in the distribution and clinical outcomes of RAS codon and other mutations in multiple myeloma dependent upon primary molecular subgroup. |
format | Online Article Text |
id | pubmed-5438613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-54386132017-05-24 The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma Stein, Caleb K. Pawlyn, Charlotte Chavan, Shweta Rasche, Leo Weinhold, Niels Corken, Adam Buros, Amy Sonneveld, Pieter Jackson, Graham H. Landgren, Ola Mughal, Tariq He, Jie Barlogie, Bart Bergsagel, P. Leif Davies, Faith E. Walker, Brian A. Morgan, Gareth J. Oncotarget Research Paper We examined a set of 805 cases that underwent DNA sequencing using the FoundationOne Heme (F1H) targeted sequencing panel and gene expression profiling. Known and likely variant calls from the mutational data were analyzed for significant associations with gene expression defined translocation cyclin D (TC) molecular subgroups. The spectrum of KRAS, NRAS, and BRAF codon mutations varied across subgroups with NRAS mutations at Q61 codon being common in hyperdiploid (HRD) and t(11;14) myeloma while being rare in MMSET and MAF. In addition, the presence of RAS-RAF mutations was inversely associated with NFκB pathway activation in all subgroups excluding MAF. In the MMSET subgroup, cases with low FGFR3 expression frequently had RAS-RAF mutations. Conditional inference tree analysis determined that mutation and homozygous deletion of TP53, CDKN2C, and RB1 were key prognostic factors associated with adverse outcome in a non-relapse clinical setting. In conclusion, this study highlights the heterogeneity in the distribution and clinical outcomes of RAS codon and other mutations in multiple myeloma dependent upon primary molecular subgroup. Impact Journals LLC 2017-02-24 /pmc/articles/PMC5438613/ /pubmed/28427158 http://dx.doi.org/10.18632/oncotarget.15718 Text en Copyright: © 2017 Stein et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Stein, Caleb K. Pawlyn, Charlotte Chavan, Shweta Rasche, Leo Weinhold, Niels Corken, Adam Buros, Amy Sonneveld, Pieter Jackson, Graham H. Landgren, Ola Mughal, Tariq He, Jie Barlogie, Bart Bergsagel, P. Leif Davies, Faith E. Walker, Brian A. Morgan, Gareth J. The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title | The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title_full | The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title_fullStr | The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title_full_unstemmed | The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title_short | The varied distribution and impact of RAS codon and other key DNA alterations across the translocation cyclin D subgroups in multiple myeloma |
title_sort | varied distribution and impact of ras codon and other key dna alterations across the translocation cyclin d subgroups in multiple myeloma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438613/ https://www.ncbi.nlm.nih.gov/pubmed/28427158 http://dx.doi.org/10.18632/oncotarget.15718 |
work_keys_str_mv | AT steincalebk thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT pawlyncharlotte thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT chavanshweta thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT rascheleo thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT weinholdniels thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT corkenadam thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT burosamy thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT sonneveldpieter thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT jacksongrahamh thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT landgrenola thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT mughaltariq thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT hejie thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT barlogiebart thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT bergsagelpleif thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT daviesfaithe thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT walkerbriana thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT morgangarethj thevarieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT steincalebk varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT pawlyncharlotte varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT chavanshweta varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT rascheleo varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT weinholdniels varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT corkenadam varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT burosamy varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT sonneveldpieter varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT jacksongrahamh varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT landgrenola varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT mughaltariq varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT hejie varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT barlogiebart varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT bergsagelpleif varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT daviesfaithe varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT walkerbriana varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma AT morgangarethj varieddistributionandimpactofrascodonandotherkeydnaalterationsacrossthetranslocationcyclindsubgroupsinmultiplemyeloma |