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Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science

Next-generation sequencing technologies have revolutionized genomics and altered the scientific publication landscape. Life-science journals abound with genome papers—peer-reviewed descriptions of newly sequenced chromosomes. Although they once filled the pages of Nature and Science, genome papers a...

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Detalles Bibliográficos
Autor principal: Smith, David Roy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5439286/
https://www.ncbi.nlm.nih.gov/pubmed/27339634
http://dx.doi.org/10.1093/bfgp/elw026
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author Smith, David Roy
author_facet Smith, David Roy
author_sort Smith, David Roy
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description Next-generation sequencing technologies have revolutionized genomics and altered the scientific publication landscape. Life-science journals abound with genome papers—peer-reviewed descriptions of newly sequenced chromosomes. Although they once filled the pages of Nature and Science, genome papers are now mostly relegated to journals with low-impact factors. Some have forecast the death of the genome paper and argued that they are using up valuable resources and not advancing science. However, the publication rate of genome papers is on the rise. This increase is largely because some journals have created a new category of manuscript called genome reports, which are short, fast-tracked papers describing a chromosome sequence(s), its GenBank accession number and little else. In 2015, for example, more than 2000 genome reports were published, and 2016 is poised to bring even more. Here, I highlight the growing popularity of genome reports and discuss their merits, drawbacks and impact on science and the academic publication infrastructure. Genome reports can be excellent assets for the research community, but they are also being used as quick and easy routes to a publication, and in some instances they are not peer reviewed. One of the best arguments for genome reports is that they are a citable, user-generated genomic resource providing essential methodological and biological information, which may not be present in the sequence database. But they are expensive and time-consuming avenues for achieving such a goal.
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spelling pubmed-54392862017-05-25 Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science Smith, David Roy Brief Funct Genomics Papers Next-generation sequencing technologies have revolutionized genomics and altered the scientific publication landscape. Life-science journals abound with genome papers—peer-reviewed descriptions of newly sequenced chromosomes. Although they once filled the pages of Nature and Science, genome papers are now mostly relegated to journals with low-impact factors. Some have forecast the death of the genome paper and argued that they are using up valuable resources and not advancing science. However, the publication rate of genome papers is on the rise. This increase is largely because some journals have created a new category of manuscript called genome reports, which are short, fast-tracked papers describing a chromosome sequence(s), its GenBank accession number and little else. In 2015, for example, more than 2000 genome reports were published, and 2016 is poised to bring even more. Here, I highlight the growing popularity of genome reports and discuss their merits, drawbacks and impact on science and the academic publication infrastructure. Genome reports can be excellent assets for the research community, but they are also being used as quick and easy routes to a publication, and in some instances they are not peer reviewed. One of the best arguments for genome reports is that they are a citable, user-generated genomic resource providing essential methodological and biological information, which may not be present in the sequence database. But they are expensive and time-consuming avenues for achieving such a goal. Oxford University Press 2017-05 2016-06-22 /pmc/articles/PMC5439286/ /pubmed/27339634 http://dx.doi.org/10.1093/bfgp/elw026 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Papers
Smith, David Roy
Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title_full Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title_fullStr Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title_full_unstemmed Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title_short Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
title_sort goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science
topic Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5439286/
https://www.ncbi.nlm.nih.gov/pubmed/27339634
http://dx.doi.org/10.1093/bfgp/elw026
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