Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609

Most eukaryotic oleaginous species are yeasts and among them the basidiomycete red yeast, Rhodotorula (Rhodosporidium) toruloides (Pucciniomycotina) is known to produce high quantities of lipids when grown in nitrogen-limiting media, and has potential for biodiesel production. The genome of the CGMC...

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Autores principales: Sambles, Christine, Middelhaufe, Sabine, Soanes, Darren, Kolak, Dagmara, Lux, Thomas, Moore, Karen, Matoušková, Petra, Parker, David, Lee, Rob, Love, John, Aves, Stephen J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440251/
https://www.ncbi.nlm.nih.gov/pubmed/28560168
http://dx.doi.org/10.1016/j.gdata.2017.05.009
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author Sambles, Christine
Middelhaufe, Sabine
Soanes, Darren
Kolak, Dagmara
Lux, Thomas
Moore, Karen
Matoušková, Petra
Parker, David
Lee, Rob
Love, John
Aves, Stephen J.
author_facet Sambles, Christine
Middelhaufe, Sabine
Soanes, Darren
Kolak, Dagmara
Lux, Thomas
Moore, Karen
Matoušková, Petra
Parker, David
Lee, Rob
Love, John
Aves, Stephen J.
author_sort Sambles, Christine
collection PubMed
description Most eukaryotic oleaginous species are yeasts and among them the basidiomycete red yeast, Rhodotorula (Rhodosporidium) toruloides (Pucciniomycotina) is known to produce high quantities of lipids when grown in nitrogen-limiting media, and has potential for biodiesel production. The genome of the CGMCC 2.1609 strain of this oleaginous red yeast was sequenced using a hybrid of Roche 454 and Illumina technology generating 13 × coverage. The de novo assembly was carried out using MIRA and scaffolded using MAQ and BAMBUS. The sequencing and assembly resulted in 365 scaffolds with total genome size of 33.4 Mb. The complete genome sequence of this strain was deposited in GenBank and the accession number is LKER00000000. The annotation is available on Figshare (doi:10.6084/m9.figshare.4754251).
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spelling pubmed-54402512017-05-30 Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609 Sambles, Christine Middelhaufe, Sabine Soanes, Darren Kolak, Dagmara Lux, Thomas Moore, Karen Matoušková, Petra Parker, David Lee, Rob Love, John Aves, Stephen J. Genom Data Data in Brief Most eukaryotic oleaginous species are yeasts and among them the basidiomycete red yeast, Rhodotorula (Rhodosporidium) toruloides (Pucciniomycotina) is known to produce high quantities of lipids when grown in nitrogen-limiting media, and has potential for biodiesel production. The genome of the CGMCC 2.1609 strain of this oleaginous red yeast was sequenced using a hybrid of Roche 454 and Illumina technology generating 13 × coverage. The de novo assembly was carried out using MIRA and scaffolded using MAQ and BAMBUS. The sequencing and assembly resulted in 365 scaffolds with total genome size of 33.4 Mb. The complete genome sequence of this strain was deposited in GenBank and the accession number is LKER00000000. The annotation is available on Figshare (doi:10.6084/m9.figshare.4754251). Elsevier 2017-05-15 /pmc/articles/PMC5440251/ /pubmed/28560168 http://dx.doi.org/10.1016/j.gdata.2017.05.009 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Sambles, Christine
Middelhaufe, Sabine
Soanes, Darren
Kolak, Dagmara
Lux, Thomas
Moore, Karen
Matoušková, Petra
Parker, David
Lee, Rob
Love, John
Aves, Stephen J.
Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title_full Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title_fullStr Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title_full_unstemmed Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title_short Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609
title_sort genome sequence of the oleaginous yeast rhodotorula toruloides strain cgmcc 2.1609
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440251/
https://www.ncbi.nlm.nih.gov/pubmed/28560168
http://dx.doi.org/10.1016/j.gdata.2017.05.009
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