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Small RNA sequencing for secondary metabolite analysis in Persicaria minor

Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of man...

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Autores principales: Samad, Abdul Fatah A., Nazaruddin, Nazaruddin, Sajad, Muhammad, Jani, Jaeyres, Murad, Abdul Munir Abdul, Zainal, Zamri, Ismail, Ismanizan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440675/
https://www.ncbi.nlm.nih.gov/pubmed/28560169
http://dx.doi.org/10.1016/j.gdata.2017.05.014
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author Samad, Abdul Fatah A.
Nazaruddin, Nazaruddin
Sajad, Muhammad
Jani, Jaeyres
Murad, Abdul Munir Abdul
Zainal, Zamri
Ismail, Ismanizan
author_facet Samad, Abdul Fatah A.
Nazaruddin, Nazaruddin
Sajad, Muhammad
Jani, Jaeyres
Murad, Abdul Munir Abdul
Zainal, Zamri
Ismail, Ismanizan
author_sort Samad, Abdul Fatah A.
collection PubMed
description Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected).
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spelling pubmed-54406752017-05-30 Small RNA sequencing for secondary metabolite analysis in Persicaria minor Samad, Abdul Fatah A. Nazaruddin, Nazaruddin Sajad, Muhammad Jani, Jaeyres Murad, Abdul Munir Abdul Zainal, Zamri Ismail, Ismanizan Genom Data Data in Brief Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected). Elsevier 2017-05-13 /pmc/articles/PMC5440675/ /pubmed/28560169 http://dx.doi.org/10.1016/j.gdata.2017.05.014 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data in Brief
Samad, Abdul Fatah A.
Nazaruddin, Nazaruddin
Sajad, Muhammad
Jani, Jaeyres
Murad, Abdul Munir Abdul
Zainal, Zamri
Ismail, Ismanizan
Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title_full Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title_fullStr Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title_full_unstemmed Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title_short Small RNA sequencing for secondary metabolite analysis in Persicaria minor
title_sort small rna sequencing for secondary metabolite analysis in persicaria minor
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440675/
https://www.ncbi.nlm.nih.gov/pubmed/28560169
http://dx.doi.org/10.1016/j.gdata.2017.05.014
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