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Small RNA sequencing for secondary metabolite analysis in Persicaria minor
Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of man...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440675/ https://www.ncbi.nlm.nih.gov/pubmed/28560169 http://dx.doi.org/10.1016/j.gdata.2017.05.014 |
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author | Samad, Abdul Fatah A. Nazaruddin, Nazaruddin Sajad, Muhammad Jani, Jaeyres Murad, Abdul Munir Abdul Zainal, Zamri Ismail, Ismanizan |
author_facet | Samad, Abdul Fatah A. Nazaruddin, Nazaruddin Sajad, Muhammad Jani, Jaeyres Murad, Abdul Munir Abdul Zainal, Zamri Ismail, Ismanizan |
author_sort | Samad, Abdul Fatah A. |
collection | PubMed |
description | Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected). |
format | Online Article Text |
id | pubmed-5440675 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-54406752017-05-30 Small RNA sequencing for secondary metabolite analysis in Persicaria minor Samad, Abdul Fatah A. Nazaruddin, Nazaruddin Sajad, Muhammad Jani, Jaeyres Murad, Abdul Munir Abdul Zainal, Zamri Ismail, Ismanizan Genom Data Data in Brief Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected). Elsevier 2017-05-13 /pmc/articles/PMC5440675/ /pubmed/28560169 http://dx.doi.org/10.1016/j.gdata.2017.05.014 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data in Brief Samad, Abdul Fatah A. Nazaruddin, Nazaruddin Sajad, Muhammad Jani, Jaeyres Murad, Abdul Munir Abdul Zainal, Zamri Ismail, Ismanizan Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title | Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_full | Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_fullStr | Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_full_unstemmed | Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_short | Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_sort | small rna sequencing for secondary metabolite analysis in persicaria minor |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440675/ https://www.ncbi.nlm.nih.gov/pubmed/28560169 http://dx.doi.org/10.1016/j.gdata.2017.05.014 |
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