Cargando…

Development of machine learning models for diagnosis of glaucoma

The study aimed to develop machine learning models that have strong prediction power and interpretability for diagnosis of glaucoma based on retinal nerve fiber layer (RNFL) thickness and visual field (VF). We collected various candidate features from the examination of retinal nerve fiber layer (RN...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Seong Jae, Cho, Kyong Jin, Oh, Sejong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441603/
https://www.ncbi.nlm.nih.gov/pubmed/28542342
http://dx.doi.org/10.1371/journal.pone.0177726
_version_ 1783238289372741632
author Kim, Seong Jae
Cho, Kyong Jin
Oh, Sejong
author_facet Kim, Seong Jae
Cho, Kyong Jin
Oh, Sejong
author_sort Kim, Seong Jae
collection PubMed
description The study aimed to develop machine learning models that have strong prediction power and interpretability for diagnosis of glaucoma based on retinal nerve fiber layer (RNFL) thickness and visual field (VF). We collected various candidate features from the examination of retinal nerve fiber layer (RNFL) thickness and visual field (VF). We also developed synthesized features from original features. We then selected the best features proper for classification (diagnosis) through feature evaluation. We used 100 cases of data as a test dataset and 399 cases of data as a training and validation dataset. To develop the glaucoma prediction model, we considered four machine learning algorithms: C5.0, random forest (RF), support vector machine (SVM), and k-nearest neighbor (KNN). We repeatedly composed a learning model using the training dataset and evaluated it by using the validation dataset. Finally, we got the best learning model that produces the highest validation accuracy. We analyzed quality of the models using several measures. The random forest model shows best performance and C5.0, SVM, and KNN models show similar accuracy. In the random forest model, the classification accuracy is 0.98, sensitivity is 0.983, specificity is 0.975, and AUC is 0.979. The developed prediction models show high accuracy, sensitivity, specificity, and AUC in classifying among glaucoma and healthy eyes. It will be used for predicting glaucoma against unknown examination records. Clinicians may reference the prediction results and be able to make better decisions. We may combine multiple learning models to increase prediction accuracy. The C5.0 model includes decision rules for prediction. It can be used to explain the reasons for specific predictions.
format Online
Article
Text
id pubmed-5441603
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-54416032017-06-06 Development of machine learning models for diagnosis of glaucoma Kim, Seong Jae Cho, Kyong Jin Oh, Sejong PLoS One Research Article The study aimed to develop machine learning models that have strong prediction power and interpretability for diagnosis of glaucoma based on retinal nerve fiber layer (RNFL) thickness and visual field (VF). We collected various candidate features from the examination of retinal nerve fiber layer (RNFL) thickness and visual field (VF). We also developed synthesized features from original features. We then selected the best features proper for classification (diagnosis) through feature evaluation. We used 100 cases of data as a test dataset and 399 cases of data as a training and validation dataset. To develop the glaucoma prediction model, we considered four machine learning algorithms: C5.0, random forest (RF), support vector machine (SVM), and k-nearest neighbor (KNN). We repeatedly composed a learning model using the training dataset and evaluated it by using the validation dataset. Finally, we got the best learning model that produces the highest validation accuracy. We analyzed quality of the models using several measures. The random forest model shows best performance and C5.0, SVM, and KNN models show similar accuracy. In the random forest model, the classification accuracy is 0.98, sensitivity is 0.983, specificity is 0.975, and AUC is 0.979. The developed prediction models show high accuracy, sensitivity, specificity, and AUC in classifying among glaucoma and healthy eyes. It will be used for predicting glaucoma against unknown examination records. Clinicians may reference the prediction results and be able to make better decisions. We may combine multiple learning models to increase prediction accuracy. The C5.0 model includes decision rules for prediction. It can be used to explain the reasons for specific predictions. Public Library of Science 2017-05-23 /pmc/articles/PMC5441603/ /pubmed/28542342 http://dx.doi.org/10.1371/journal.pone.0177726 Text en © 2017 Kim et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kim, Seong Jae
Cho, Kyong Jin
Oh, Sejong
Development of machine learning models for diagnosis of glaucoma
title Development of machine learning models for diagnosis of glaucoma
title_full Development of machine learning models for diagnosis of glaucoma
title_fullStr Development of machine learning models for diagnosis of glaucoma
title_full_unstemmed Development of machine learning models for diagnosis of glaucoma
title_short Development of machine learning models for diagnosis of glaucoma
title_sort development of machine learning models for diagnosis of glaucoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441603/
https://www.ncbi.nlm.nih.gov/pubmed/28542342
http://dx.doi.org/10.1371/journal.pone.0177726
work_keys_str_mv AT kimseongjae developmentofmachinelearningmodelsfordiagnosisofglaucoma
AT chokyongjin developmentofmachinelearningmodelsfordiagnosisofglaucoma
AT ohsejong developmentofmachinelearningmodelsfordiagnosisofglaucoma