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SesameFG: an integrated database for the functional genomics of sesame

Sesame (Sesamum indicum L.) has high oil content, a small diploid genome and a short growth period, making it an attractive species for genetic studies on oilseed crops. With the advancement of next-generation sequencing technology, genomics and functional genomics research of sesame has developed q...

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Autores principales: Wei, Xin, Gong, Hao, Yu, Jingyin, Liu, Pan, Wang, Linhai, Zhang, Yanxin, Zhang, Xiurong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443765/
https://www.ncbi.nlm.nih.gov/pubmed/28539606
http://dx.doi.org/10.1038/s41598-017-02586-3
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author Wei, Xin
Gong, Hao
Yu, Jingyin
Liu, Pan
Wang, Linhai
Zhang, Yanxin
Zhang, Xiurong
author_facet Wei, Xin
Gong, Hao
Yu, Jingyin
Liu, Pan
Wang, Linhai
Zhang, Yanxin
Zhang, Xiurong
author_sort Wei, Xin
collection PubMed
description Sesame (Sesamum indicum L.) has high oil content, a small diploid genome and a short growth period, making it an attractive species for genetic studies on oilseed crops. With the advancement of next-generation sequencing technology, genomics and functional genomics research of sesame has developed quickly in the last few years, and large amounts of data have been generated. However, these results are distributed in many different publications, and there is a lack of integration. To promote functional genomics research of sesame, we collected genetic information combined with comprehensive phenotypic information and integrated them in the web-based database named SesameFG. The current version of SesameFG contains phenotypic information on agronomic traits of 705 sesame accessions, de novo assembled genomes of three sesame varieties, massive numbers of identified SNPs, gene expression profiles of five tissues, gene families, candidate genes for the important agronomic traits and genomic-SSR markers. All phenotypic and genotypic information in SesameFG is available for online queries and can be downloaded freely. SesameFG provides useful search functions and data mining tools, including Genome Browser and local BLAST services. SesameFG is freely accessible at http://ncgr.ac.cn/SesameFG/. SesameFG provides valuable resources and tools for functional genomics research and the molecular breeding of sesame.
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spelling pubmed-54437652017-05-26 SesameFG: an integrated database for the functional genomics of sesame Wei, Xin Gong, Hao Yu, Jingyin Liu, Pan Wang, Linhai Zhang, Yanxin Zhang, Xiurong Sci Rep Article Sesame (Sesamum indicum L.) has high oil content, a small diploid genome and a short growth period, making it an attractive species for genetic studies on oilseed crops. With the advancement of next-generation sequencing technology, genomics and functional genomics research of sesame has developed quickly in the last few years, and large amounts of data have been generated. However, these results are distributed in many different publications, and there is a lack of integration. To promote functional genomics research of sesame, we collected genetic information combined with comprehensive phenotypic information and integrated them in the web-based database named SesameFG. The current version of SesameFG contains phenotypic information on agronomic traits of 705 sesame accessions, de novo assembled genomes of three sesame varieties, massive numbers of identified SNPs, gene expression profiles of five tissues, gene families, candidate genes for the important agronomic traits and genomic-SSR markers. All phenotypic and genotypic information in SesameFG is available for online queries and can be downloaded freely. SesameFG provides useful search functions and data mining tools, including Genome Browser and local BLAST services. SesameFG is freely accessible at http://ncgr.ac.cn/SesameFG/. SesameFG provides valuable resources and tools for functional genomics research and the molecular breeding of sesame. Nature Publishing Group UK 2017-05-24 /pmc/articles/PMC5443765/ /pubmed/28539606 http://dx.doi.org/10.1038/s41598-017-02586-3 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wei, Xin
Gong, Hao
Yu, Jingyin
Liu, Pan
Wang, Linhai
Zhang, Yanxin
Zhang, Xiurong
SesameFG: an integrated database for the functional genomics of sesame
title SesameFG: an integrated database for the functional genomics of sesame
title_full SesameFG: an integrated database for the functional genomics of sesame
title_fullStr SesameFG: an integrated database for the functional genomics of sesame
title_full_unstemmed SesameFG: an integrated database for the functional genomics of sesame
title_short SesameFG: an integrated database for the functional genomics of sesame
title_sort sesamefg: an integrated database for the functional genomics of sesame
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443765/
https://www.ncbi.nlm.nih.gov/pubmed/28539606
http://dx.doi.org/10.1038/s41598-017-02586-3
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