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The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data

MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to produce guidelines for reporting results from the diverse types of experiments and analyses used in structural and funct...

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Autores principales: Liu, Yan, McBride, Ryan, Stoll, Mark, Palma, Angelina S, Silva, Lisete, Agravat, Sanjay, Aoki-Kinoshita, Kiyoko F, Campbell, Matthew P, Costello, Catherine E, Dell, Anne, Haslam, Stuart M, Karlsson, Niclas G, Khoo, Kay-Hooi, Kolarich, Daniel, Novotny, Milos V, Packer, Nicolle H, Ranzinger, Rene, Rapp, Erdmann, Rudd, Pauline M, Struwe, Weston B, Tiemeyer, Michael, Wells, Lance, York, William S, Zaia, Joseph, Kettner, Carsten, Paulson, James C, Feizi, Ten, Smith, David F
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444268/
https://www.ncbi.nlm.nih.gov/pubmed/27993942
http://dx.doi.org/10.1093/glycob/cww118
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author Liu, Yan
McBride, Ryan
Stoll, Mark
Palma, Angelina S
Silva, Lisete
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Haslam, Stuart M
Karlsson, Niclas G
Khoo, Kay-Hooi
Kolarich, Daniel
Novotny, Milos V
Packer, Nicolle H
Ranzinger, Rene
Rapp, Erdmann
Rudd, Pauline M
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
York, William S
Zaia, Joseph
Kettner, Carsten
Paulson, James C
Feizi, Ten
Smith, David F
author_facet Liu, Yan
McBride, Ryan
Stoll, Mark
Palma, Angelina S
Silva, Lisete
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Haslam, Stuart M
Karlsson, Niclas G
Khoo, Kay-Hooi
Kolarich, Daniel
Novotny, Milos V
Packer, Nicolle H
Ranzinger, Rene
Rapp, Erdmann
Rudd, Pauline M
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
York, William S
Zaia, Joseph
Kettner, Carsten
Paulson, James C
Feizi, Ten
Smith, David F
author_sort Liu, Yan
collection PubMed
description MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to produce guidelines for reporting results from the diverse types of experiments and analyses used in structural and functional studies of glycans in the scientific literature. As a sequel to the guidelines for sample preparation (Struwe et al. 2016, Glycobiology, 26:907–910) and mass spectrometry  data (Kolarich et al. 2013, Mol. Cell Proteomics, 12:991–995), here we present the first version of guidelines intended to improve the standards for reporting data from glycan microarray analyses. For each of eight areas in the workflow of a glycan microarray experiment, we provide guidelines for the minimal information that should be provided in reporting results. We hope that the MIRAGE glycan microarray guidelines proposed here will gain broad acceptance by the community, and will facilitate interpretation and reproducibility of the glycan microarray results with implications in comparison of data from different laboratories and eventual deposition of glycan microarray data in international databases.
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spelling pubmed-54442682017-05-31 The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data Liu, Yan McBride, Ryan Stoll, Mark Palma, Angelina S Silva, Lisete Agravat, Sanjay Aoki-Kinoshita, Kiyoko F Campbell, Matthew P Costello, Catherine E Dell, Anne Haslam, Stuart M Karlsson, Niclas G Khoo, Kay-Hooi Kolarich, Daniel Novotny, Milos V Packer, Nicolle H Ranzinger, Rene Rapp, Erdmann Rudd, Pauline M Struwe, Weston B Tiemeyer, Michael Wells, Lance York, William S Zaia, Joseph Kettner, Carsten Paulson, James C Feizi, Ten Smith, David F Glycobiology Glyco-Forum Section MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to produce guidelines for reporting results from the diverse types of experiments and analyses used in structural and functional studies of glycans in the scientific literature. As a sequel to the guidelines for sample preparation (Struwe et al. 2016, Glycobiology, 26:907–910) and mass spectrometry  data (Kolarich et al. 2013, Mol. Cell Proteomics, 12:991–995), here we present the first version of guidelines intended to improve the standards for reporting data from glycan microarray analyses. For each of eight areas in the workflow of a glycan microarray experiment, we provide guidelines for the minimal information that should be provided in reporting results. We hope that the MIRAGE glycan microarray guidelines proposed here will gain broad acceptance by the community, and will facilitate interpretation and reproducibility of the glycan microarray results with implications in comparison of data from different laboratories and eventual deposition of glycan microarray data in international databases. Oxford University Press 2017-04 2016-12-19 /pmc/articles/PMC5444268/ /pubmed/27993942 http://dx.doi.org/10.1093/glycob/cww118 Text en © The Author 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Glyco-Forum Section
Liu, Yan
McBride, Ryan
Stoll, Mark
Palma, Angelina S
Silva, Lisete
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Haslam, Stuart M
Karlsson, Niclas G
Khoo, Kay-Hooi
Kolarich, Daniel
Novotny, Milos V
Packer, Nicolle H
Ranzinger, Rene
Rapp, Erdmann
Rudd, Pauline M
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
York, William S
Zaia, Joseph
Kettner, Carsten
Paulson, James C
Feizi, Ten
Smith, David F
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title_full The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title_fullStr The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title_full_unstemmed The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title_short The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
title_sort minimum information required for a glycomics experiment (mirage) project: improving the standards for reporting glycan microarray-based data
topic Glyco-Forum Section
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444268/
https://www.ncbi.nlm.nih.gov/pubmed/27993942
http://dx.doi.org/10.1093/glycob/cww118
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