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Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition
The ecological niche concept has regained interest under environmental change (e.g., climate change, eutrophication, and habitat destruction), especially to study the impacts on niche shift and conservatism. Here, we propose the within outlying mean indexes (WitOMI), which refine the outlying mean i...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444369/ https://www.ncbi.nlm.nih.gov/pubmed/28560109 http://dx.doi.org/10.7717/peerj.3364 |
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author | Karasiewicz, Stéphane Dolédec, Sylvain Lefebvre, Sébastien |
author_facet | Karasiewicz, Stéphane Dolédec, Sylvain Lefebvre, Sébastien |
author_sort | Karasiewicz, Stéphane |
collection | PubMed |
description | The ecological niche concept has regained interest under environmental change (e.g., climate change, eutrophication, and habitat destruction), especially to study the impacts on niche shift and conservatism. Here, we propose the within outlying mean indexes (WitOMI), which refine the outlying mean index (OMI) analysis by using its properties in combination with the K-select analysis species marginality decomposition. The purpose is to decompose the ecological niche into subniches associated with the experimental design, i.e., taking into account temporal and/or spatial subsets. WitOMI emphasize the habitat conditions that contribute (1) to the definition of species’ niches using all available conditions and, at the same time, (2) to the delineation of species’ subniches according to given subsets of dates or sites. The latter aspect allows addressing niche dynamics by highlighting the influence of atypical habitat conditions on species at a given time and/or space. Then, (3) the biological constraint exerted on the species subniche becomes observable within Euclidean space as the difference between the existing fundamental subniche and the realized subniche. We illustrate the decomposition of published OMI analyses, using spatial and temporal examples. The species assemblage’s subniches are comparable to the same environmental gradient, producing a more accurate and precise description of the assemblage niche distribution under environmental change. The WitOMI calculations are available in the open-access R package “subniche.” |
format | Online Article Text |
id | pubmed-5444369 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54443692017-05-30 Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition Karasiewicz, Stéphane Dolédec, Sylvain Lefebvre, Sébastien PeerJ Biogeography The ecological niche concept has regained interest under environmental change (e.g., climate change, eutrophication, and habitat destruction), especially to study the impacts on niche shift and conservatism. Here, we propose the within outlying mean indexes (WitOMI), which refine the outlying mean index (OMI) analysis by using its properties in combination with the K-select analysis species marginality decomposition. The purpose is to decompose the ecological niche into subniches associated with the experimental design, i.e., taking into account temporal and/or spatial subsets. WitOMI emphasize the habitat conditions that contribute (1) to the definition of species’ niches using all available conditions and, at the same time, (2) to the delineation of species’ subniches according to given subsets of dates or sites. The latter aspect allows addressing niche dynamics by highlighting the influence of atypical habitat conditions on species at a given time and/or space. Then, (3) the biological constraint exerted on the species subniche becomes observable within Euclidean space as the difference between the existing fundamental subniche and the realized subniche. We illustrate the decomposition of published OMI analyses, using spatial and temporal examples. The species assemblage’s subniches are comparable to the same environmental gradient, producing a more accurate and precise description of the assemblage niche distribution under environmental change. The WitOMI calculations are available in the open-access R package “subniche.” PeerJ Inc. 2017-05-23 /pmc/articles/PMC5444369/ /pubmed/28560109 http://dx.doi.org/10.7717/peerj.3364 Text en © 2017 Karasiewicz et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biogeography Karasiewicz, Stéphane Dolédec, Sylvain Lefebvre, Sébastien Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title | Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title_full | Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title_fullStr | Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title_full_unstemmed | Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title_short | Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition |
title_sort | within outlying mean indexes: refining the omi analysis for the realized niche decomposition |
topic | Biogeography |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444369/ https://www.ncbi.nlm.nih.gov/pubmed/28560109 http://dx.doi.org/10.7717/peerj.3364 |
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