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Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design
Accounting for the interannual climatic variations is a well-known issue for simulation-based studies of environmental systems. It often requires intensive sampling (e.g., averaging the simulation outputs over many climatic series), which hinders many sequential processes, in particular optimization...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444610/ https://www.ncbi.nlm.nih.gov/pubmed/28542198 http://dx.doi.org/10.1371/journal.pone.0176815 |
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author | Picheny, Victor Trépos, Ronan Casadebaig, Pierre |
author_facet | Picheny, Victor Trépos, Ronan Casadebaig, Pierre |
author_sort | Picheny, Victor |
collection | PubMed |
description | Accounting for the interannual climatic variations is a well-known issue for simulation-based studies of environmental systems. It often requires intensive sampling (e.g., averaging the simulation outputs over many climatic series), which hinders many sequential processes, in particular optimization algorithms. We propose here an approach based on a subset selection in a large basis of climatic series, using an ad-hoc similarity function and clustering. A non-parametric reconstruction technique is introduced to estimate accurately the distribution of the output of interest using only the subset sampling. The proposed strategy is non-intrusive and generic (i.e. transposable to most models with climatic data inputs), and can be combined to most “off-the-shelf” optimization solvers. We apply our approach to sunflower ideotype design using the crop model SUNFLO. The underlying optimization problem is formulated as a multi-objective one to account for risk-aversion. Our approach achieves good performances even for limited computational budgets, outperforming significantly standard strategies. |
format | Online Article Text |
id | pubmed-5444610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54446102017-06-12 Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design Picheny, Victor Trépos, Ronan Casadebaig, Pierre PLoS One Research Article Accounting for the interannual climatic variations is a well-known issue for simulation-based studies of environmental systems. It often requires intensive sampling (e.g., averaging the simulation outputs over many climatic series), which hinders many sequential processes, in particular optimization algorithms. We propose here an approach based on a subset selection in a large basis of climatic series, using an ad-hoc similarity function and clustering. A non-parametric reconstruction technique is introduced to estimate accurately the distribution of the output of interest using only the subset sampling. The proposed strategy is non-intrusive and generic (i.e. transposable to most models with climatic data inputs), and can be combined to most “off-the-shelf” optimization solvers. We apply our approach to sunflower ideotype design using the crop model SUNFLO. The underlying optimization problem is formulated as a multi-objective one to account for risk-aversion. Our approach achieves good performances even for limited computational budgets, outperforming significantly standard strategies. Public Library of Science 2017-05-25 /pmc/articles/PMC5444610/ /pubmed/28542198 http://dx.doi.org/10.1371/journal.pone.0176815 Text en © 2017 Picheny et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Picheny, Victor Trépos, Ronan Casadebaig, Pierre Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title | Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title_full | Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title_fullStr | Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title_full_unstemmed | Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title_short | Optimization of black-box models with uncertain climatic inputs—Application to sunflower ideotype design |
title_sort | optimization of black-box models with uncertain climatic inputs—application to sunflower ideotype design |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444610/ https://www.ncbi.nlm.nih.gov/pubmed/28542198 http://dx.doi.org/10.1371/journal.pone.0176815 |
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