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Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development
Pharmacometric analyses are complex and multifactorial. It is essential to check, track, and document the vast amounts of data and metadata that are generated during these analyses (and the relationships between them) in order to comply with regulations, support quality control, auditing, and report...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445227/ https://www.ncbi.nlm.nih.gov/pubmed/28504472 http://dx.doi.org/10.1002/psp4.12171 |
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author | Wilkins, JJ Chan, PLS Chard, J Smith, G Smith, MK Beer, M Dunn, A Flandorfer, C Franklin, C Gomeni, R Harnisch, L Kaye, R Moodie, S Sardu, ML Wang, E Watson, E Wolstencroft, K Cheung, SYA |
author_facet | Wilkins, JJ Chan, PLS Chard, J Smith, G Smith, MK Beer, M Dunn, A Flandorfer, C Franklin, C Gomeni, R Harnisch, L Kaye, R Moodie, S Sardu, ML Wang, E Watson, E Wolstencroft, K Cheung, SYA |
author_sort | Wilkins, JJ |
collection | PubMed |
description | Pharmacometric analyses are complex and multifactorial. It is essential to check, track, and document the vast amounts of data and metadata that are generated during these analyses (and the relationships between them) in order to comply with regulations, support quality control, auditing, and reporting. It is, however, challenging, tedious, error‐prone, and time‐consuming, and diverts pharmacometricians from the more useful business of doing science. Automating this process would save time, reduce transcriptional errors, support the retention and transfer of knowledge, encourage good practice, and help ensure that pharmacometric analyses appropriately impact decisions. The ability to document, communicate, and reconstruct a complete pharmacometric analysis using an open standard would have considerable benefits. In this article, the Innovative Medicines Initiative (IMI) Drug Disease Model Resources (DDMoRe) consortium proposes a set of standards to facilitate the capture, storage, and reporting of knowledge (including assumptions and decisions) in the context of model‐informed drug discovery and development (MID3), as well as to support reproducibility: “Thoughtflow.” A prototype software implementation is provided. |
format | Online Article Text |
id | pubmed-5445227 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-54452272017-05-30 Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development Wilkins, JJ Chan, PLS Chard, J Smith, G Smith, MK Beer, M Dunn, A Flandorfer, C Franklin, C Gomeni, R Harnisch, L Kaye, R Moodie, S Sardu, ML Wang, E Watson, E Wolstencroft, K Cheung, SYA CPT Pharmacometrics Syst Pharmacol White Paper Pharmacometric analyses are complex and multifactorial. It is essential to check, track, and document the vast amounts of data and metadata that are generated during these analyses (and the relationships between them) in order to comply with regulations, support quality control, auditing, and reporting. It is, however, challenging, tedious, error‐prone, and time‐consuming, and diverts pharmacometricians from the more useful business of doing science. Automating this process would save time, reduce transcriptional errors, support the retention and transfer of knowledge, encourage good practice, and help ensure that pharmacometric analyses appropriately impact decisions. The ability to document, communicate, and reconstruct a complete pharmacometric analysis using an open standard would have considerable benefits. In this article, the Innovative Medicines Initiative (IMI) Drug Disease Model Resources (DDMoRe) consortium proposes a set of standards to facilitate the capture, storage, and reporting of knowledge (including assumptions and decisions) in the context of model‐informed drug discovery and development (MID3), as well as to support reproducibility: “Thoughtflow.” A prototype software implementation is provided. John Wiley and Sons Inc. 2017-05-15 2017-05 /pmc/articles/PMC5445227/ /pubmed/28504472 http://dx.doi.org/10.1002/psp4.12171 Text en © 2017 The Authors CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals, Inc. on behalf of American Society for Clinical Pharmacology and Therapeutics. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | White Paper Wilkins, JJ Chan, PLS Chard, J Smith, G Smith, MK Beer, M Dunn, A Flandorfer, C Franklin, C Gomeni, R Harnisch, L Kaye, R Moodie, S Sardu, ML Wang, E Watson, E Wolstencroft, K Cheung, SYA Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title | Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title_full | Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title_fullStr | Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title_full_unstemmed | Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title_short | Thoughtflow: Standards and Tools for Provenance Capture and Workflow Definition to Support Model‐Informed Drug Discovery and Development |
title_sort | thoughtflow: standards and tools for provenance capture and workflow definition to support model‐informed drug discovery and development |
topic | White Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445227/ https://www.ncbi.nlm.nih.gov/pubmed/28504472 http://dx.doi.org/10.1002/psp4.12171 |
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