Cargando…
Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process
In this work, we implement approximate Bayesian computational methods to improve the design of a wound-healing assay used to quantify cell–cell interactions. This is important as cell–cell interactions, such as adhesion and repulsion, have been shown to play a role in cell migration. Initially, we d...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445583/ https://www.ncbi.nlm.nih.gov/pubmed/28649436 http://dx.doi.org/10.1038/s41540-017-0010-7 |
_version_ | 1783238923578769408 |
---|---|
author | Ross, Robert J. H. Baker, R. E. Parker, Andrew Ford, M. J. Mort, R. L. Yates, C. A. |
author_facet | Ross, Robert J. H. Baker, R. E. Parker, Andrew Ford, M. J. Mort, R. L. Yates, C. A. |
author_sort | Ross, Robert J. H. |
collection | PubMed |
description | In this work, we implement approximate Bayesian computational methods to improve the design of a wound-healing assay used to quantify cell–cell interactions. This is important as cell–cell interactions, such as adhesion and repulsion, have been shown to play a role in cell migration. Initially, we demonstrate with a model of an unrealistic experiment that we are able to identify model parameters that describe agent motility and adhesion, given we choose appropriate summary statistics for our model data. Following this, we replace our model of an unrealistic experiment with a model representative of a practically realisable experiment. We demonstrate that, given the current (and commonly used) experimental set-up, our model parameters cannot be accurately identified using approximate Bayesian computation methods. We compare new experimental designs through simulation, and show more accurate identification of model parameters is possible by expanding the size of the domain upon which the experiment is performed, as opposed to increasing the number of experimental replicates. The results presented in this work, therefore, describe time and cost-saving alterations for a commonly performed experiment for identifying cell motility parameters. Moreover, this work will be of interest to those concerned with performing experiments that allow for the accurate identification of parameters governing cell migratory processes, especially cell migratory processes in which cell–cell adhesion or repulsion are known to play a significant role. |
format | Online Article Text |
id | pubmed-5445583 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-54455832017-06-23 Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process Ross, Robert J. H. Baker, R. E. Parker, Andrew Ford, M. J. Mort, R. L. Yates, C. A. NPJ Syst Biol Appl Article In this work, we implement approximate Bayesian computational methods to improve the design of a wound-healing assay used to quantify cell–cell interactions. This is important as cell–cell interactions, such as adhesion and repulsion, have been shown to play a role in cell migration. Initially, we demonstrate with a model of an unrealistic experiment that we are able to identify model parameters that describe agent motility and adhesion, given we choose appropriate summary statistics for our model data. Following this, we replace our model of an unrealistic experiment with a model representative of a practically realisable experiment. We demonstrate that, given the current (and commonly used) experimental set-up, our model parameters cannot be accurately identified using approximate Bayesian computation methods. We compare new experimental designs through simulation, and show more accurate identification of model parameters is possible by expanding the size of the domain upon which the experiment is performed, as opposed to increasing the number of experimental replicates. The results presented in this work, therefore, describe time and cost-saving alterations for a commonly performed experiment for identifying cell motility parameters. Moreover, this work will be of interest to those concerned with performing experiments that allow for the accurate identification of parameters governing cell migratory processes, especially cell migratory processes in which cell–cell adhesion or repulsion are known to play a significant role. Nature Publishing Group UK 2017-03-10 /pmc/articles/PMC5445583/ /pubmed/28649436 http://dx.doi.org/10.1038/s41540-017-0010-7 Text en © The Author(s) 2017 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Ross, Robert J. H. Baker, R. E. Parker, Andrew Ford, M. J. Mort, R. L. Yates, C. A. Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title | Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title_full | Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title_fullStr | Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title_full_unstemmed | Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title_short | Using approximate Bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
title_sort | using approximate bayesian computation to quantify cell–cell adhesion parameters in a cell migratory process |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445583/ https://www.ncbi.nlm.nih.gov/pubmed/28649436 http://dx.doi.org/10.1038/s41540-017-0010-7 |
work_keys_str_mv | AT rossrobertjh usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess AT bakerre usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess AT parkerandrew usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess AT fordmj usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess AT mortrl usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess AT yatesca usingapproximatebayesiancomputationtoquantifycellcelladhesionparametersinacellmigratoryprocess |