admixturegraph: an R package for admixture graph manipulation and fitting

SUMMARY: Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness...

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Detalles Bibliográficos
Autores principales: Leppälä, Kalle, Nielsen, Svend V, Mailund, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5447235/
https://www.ncbi.nlm.nih.gov/pubmed/28158333
http://dx.doi.org/10.1093/bioinformatics/btx048
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author Leppälä, Kalle
Nielsen, Svend V
Mailund, Thomas
author_facet Leppälä, Kalle
Nielsen, Svend V
Mailund, Thomas
author_sort Leppälä, Kalle
collection PubMed
description SUMMARY: Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness of fit and for evaluating the relative goodness of fit between different graphs. AVAILABILITY AND IMPLEMENTATION: GitHub: https://github.com/mailund/admixture_graph and CRAN: https://cran.r-project.org/web/packages/admixturegraph.
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spelling pubmed-54472352017-05-31 admixturegraph: an R package for admixture graph manipulation and fitting Leppälä, Kalle Nielsen, Svend V Mailund, Thomas Bioinformatics Applications Notes SUMMARY: Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness of fit and for evaluating the relative goodness of fit between different graphs. AVAILABILITY AND IMPLEMENTATION: GitHub: https://github.com/mailund/admixture_graph and CRAN: https://cran.r-project.org/web/packages/admixturegraph. Oxford University Press 2017-06-01 2017-01-31 /pmc/articles/PMC5447235/ /pubmed/28158333 http://dx.doi.org/10.1093/bioinformatics/btx048 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Leppälä, Kalle
Nielsen, Svend V
Mailund, Thomas
admixturegraph: an R package for admixture graph manipulation and fitting
title admixturegraph: an R package for admixture graph manipulation and fitting
title_full admixturegraph: an R package for admixture graph manipulation and fitting
title_fullStr admixturegraph: an R package for admixture graph manipulation and fitting
title_full_unstemmed admixturegraph: an R package for admixture graph manipulation and fitting
title_short admixturegraph: an R package for admixture graph manipulation and fitting
title_sort admixturegraph: an r package for admixture graph manipulation and fitting
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5447235/
https://www.ncbi.nlm.nih.gov/pubmed/28158333
http://dx.doi.org/10.1093/bioinformatics/btx048
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AT nielsensvendv admixturegraphanrpackageforadmixturegraphmanipulationandfitting
AT mailundthomas admixturegraphanrpackageforadmixturegraphmanipulationandfitting

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