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Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct si...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449586/ https://www.ncbi.nlm.nih.gov/pubmed/28460037 http://dx.doi.org/10.1093/nar/gkx280 |
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author | Kriegel, Franziska Ermann, Niklas Forbes, Ruaridh Dulin, David Dekker, Nynke H. Lipfert, Jan |
author_facet | Kriegel, Franziska Ermann, Niklas Forbes, Ruaridh Dulin, David Dekker, Nynke H. Lipfert, Jan |
author_sort | Kriegel, Franziska |
collection | PubMed |
description | The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct single-molecule experiments have shown its bending stiffness to depend on salt concentration. In contrast, the salt-dependence of the twist stiffness of DNA is much less explored. Here, we employ optimized multiplexed magnetic torque tweezers to study the torsional stiffness of DNA under varying salt conditions as a function of stretching force. At low forces (<3 pN), the effective torsional stiffness is ∼10% smaller for high salt conditions (500 mM NaCl or 10 mM MgCl(2)) compared to lower salt concentrations (20 mM NaCl and 100 mM NaCl). These differences, however, can be accounted for by taking into account the known salt dependence of the bending stiffness. In addition, the measured high-force (6.5 pN) torsional stiffness values of C = 103 ± 4 nm are identical, within experimental errors, for all tested salt concentration, suggesting that the intrinsic torsional stiffness of DNA does not depend on salt. |
format | Online Article Text |
id | pubmed-5449586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-54495862017-06-05 Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers Kriegel, Franziska Ermann, Niklas Forbes, Ruaridh Dulin, David Dekker, Nynke H. Lipfert, Jan Nucleic Acids Res Molecular Biology The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct single-molecule experiments have shown its bending stiffness to depend on salt concentration. In contrast, the salt-dependence of the twist stiffness of DNA is much less explored. Here, we employ optimized multiplexed magnetic torque tweezers to study the torsional stiffness of DNA under varying salt conditions as a function of stretching force. At low forces (<3 pN), the effective torsional stiffness is ∼10% smaller for high salt conditions (500 mM NaCl or 10 mM MgCl(2)) compared to lower salt concentrations (20 mM NaCl and 100 mM NaCl). These differences, however, can be accounted for by taking into account the known salt dependence of the bending stiffness. In addition, the measured high-force (6.5 pN) torsional stiffness values of C = 103 ± 4 nm are identical, within experimental errors, for all tested salt concentration, suggesting that the intrinsic torsional stiffness of DNA does not depend on salt. Oxford University Press 2017-06-02 2017-04-29 /pmc/articles/PMC5449586/ /pubmed/28460037 http://dx.doi.org/10.1093/nar/gkx280 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Molecular Biology Kriegel, Franziska Ermann, Niklas Forbes, Ruaridh Dulin, David Dekker, Nynke H. Lipfert, Jan Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title | Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title_full | Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title_fullStr | Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title_full_unstemmed | Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title_short | Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers |
title_sort | probing the salt dependence of the torsional stiffness of dna by multiplexed magnetic torque tweezers |
topic | Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449586/ https://www.ncbi.nlm.nih.gov/pubmed/28460037 http://dx.doi.org/10.1093/nar/gkx280 |
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