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Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers

The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct si...

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Autores principales: Kriegel, Franziska, Ermann, Niklas, Forbes, Ruaridh, Dulin, David, Dekker, Nynke H., Lipfert, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449586/
https://www.ncbi.nlm.nih.gov/pubmed/28460037
http://dx.doi.org/10.1093/nar/gkx280
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author Kriegel, Franziska
Ermann, Niklas
Forbes, Ruaridh
Dulin, David
Dekker, Nynke H.
Lipfert, Jan
author_facet Kriegel, Franziska
Ermann, Niklas
Forbes, Ruaridh
Dulin, David
Dekker, Nynke H.
Lipfert, Jan
author_sort Kriegel, Franziska
collection PubMed
description The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct single-molecule experiments have shown its bending stiffness to depend on salt concentration. In contrast, the salt-dependence of the twist stiffness of DNA is much less explored. Here, we employ optimized multiplexed magnetic torque tweezers to study the torsional stiffness of DNA under varying salt conditions as a function of stretching force. At low forces (<3 pN), the effective torsional stiffness is ∼10% smaller for high salt conditions (500 mM NaCl or 10 mM MgCl(2)) compared to lower salt concentrations (20 mM NaCl and 100 mM NaCl). These differences, however, can be accounted for by taking into account the known salt dependence of the bending stiffness. In addition, the measured high-force (6.5 pN) torsional stiffness values of C = 103 ± 4 nm are identical, within experimental errors, for all tested salt concentration, suggesting that the intrinsic torsional stiffness of DNA does not depend on salt.
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spelling pubmed-54495862017-06-05 Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers Kriegel, Franziska Ermann, Niklas Forbes, Ruaridh Dulin, David Dekker, Nynke H. Lipfert, Jan Nucleic Acids Res Molecular Biology The mechanical properties of DNA fundamentally constrain and enable the storage and transmission of genetic information and its use in DNA nanotechnology. Many properties of DNA depend on the ionic environment due to its highly charged backbone. In particular, both theoretical analyses and direct single-molecule experiments have shown its bending stiffness to depend on salt concentration. In contrast, the salt-dependence of the twist stiffness of DNA is much less explored. Here, we employ optimized multiplexed magnetic torque tweezers to study the torsional stiffness of DNA under varying salt conditions as a function of stretching force. At low forces (<3 pN), the effective torsional stiffness is ∼10% smaller for high salt conditions (500 mM NaCl or 10 mM MgCl(2)) compared to lower salt concentrations (20 mM NaCl and 100 mM NaCl). These differences, however, can be accounted for by taking into account the known salt dependence of the bending stiffness. In addition, the measured high-force (6.5 pN) torsional stiffness values of C = 103 ± 4 nm are identical, within experimental errors, for all tested salt concentration, suggesting that the intrinsic torsional stiffness of DNA does not depend on salt. Oxford University Press 2017-06-02 2017-04-29 /pmc/articles/PMC5449586/ /pubmed/28460037 http://dx.doi.org/10.1093/nar/gkx280 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Molecular Biology
Kriegel, Franziska
Ermann, Niklas
Forbes, Ruaridh
Dulin, David
Dekker, Nynke H.
Lipfert, Jan
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title_full Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title_fullStr Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title_full_unstemmed Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title_short Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
title_sort probing the salt dependence of the torsional stiffness of dna by multiplexed magnetic torque tweezers
topic Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449586/
https://www.ncbi.nlm.nih.gov/pubmed/28460037
http://dx.doi.org/10.1093/nar/gkx280
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