Cargando…
A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity
Lytic polysaccharide monooxygenases (LPMOs) have changed our understanding of lignocellulosic degradation dramatically over the last years. These metalloproteins catalyze oxidative cleavage of recalcitrant polysaccharides and can act on the C1 and/or C4 position of glycosidic bonds. Structural data...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451062/ https://www.ncbi.nlm.nih.gov/pubmed/28562644 http://dx.doi.org/10.1371/journal.pone.0178446 |
_version_ | 1783240109886275584 |
---|---|
author | Danneels, Barbara Tanghe, Magali Joosten, Henk-Jan Gundinger, Thomas Spadiut, Oliver Stals, Ingeborg Desmet, Tom |
author_facet | Danneels, Barbara Tanghe, Magali Joosten, Henk-Jan Gundinger, Thomas Spadiut, Oliver Stals, Ingeborg Desmet, Tom |
author_sort | Danneels, Barbara |
collection | PubMed |
description | Lytic polysaccharide monooxygenases (LPMOs) have changed our understanding of lignocellulosic degradation dramatically over the last years. These metalloproteins catalyze oxidative cleavage of recalcitrant polysaccharides and can act on the C1 and/or C4 position of glycosidic bonds. Structural data have led to several hypotheses, but we are still a long way from reaching complete understanding of the factors that determine their divergent regioselectivity. Site-directed mutagenesis enables the investigation of structure-function relationship in enzymes and will be of major importance in unraveling this intriguing matter. In this context, it is crucial to have an enzyme assay or screening approach with a direct correlation with the desired functionality. LPMOs render this search extra challenging due to their insoluble substrates, complex pattern of reaction products and lack of synthetic standards of most oxidized products. Here, we describe a regioselectivity indicator diagram based on the time-course of only 2 HPAEC-PAD signals. The diagram was successfully used to confirm the hypothesis that aromatic surface residues influence the C1/C4 oxidation ratio in Hypocrea jecorina LPMO9A. Consequently, the diagram should become a valuable tool in the search towards better understanding and engineering of regioselectivity in LPMOs. |
format | Online Article Text |
id | pubmed-5451062 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-54510622017-06-12 A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity Danneels, Barbara Tanghe, Magali Joosten, Henk-Jan Gundinger, Thomas Spadiut, Oliver Stals, Ingeborg Desmet, Tom PLoS One Research Article Lytic polysaccharide monooxygenases (LPMOs) have changed our understanding of lignocellulosic degradation dramatically over the last years. These metalloproteins catalyze oxidative cleavage of recalcitrant polysaccharides and can act on the C1 and/or C4 position of glycosidic bonds. Structural data have led to several hypotheses, but we are still a long way from reaching complete understanding of the factors that determine their divergent regioselectivity. Site-directed mutagenesis enables the investigation of structure-function relationship in enzymes and will be of major importance in unraveling this intriguing matter. In this context, it is crucial to have an enzyme assay or screening approach with a direct correlation with the desired functionality. LPMOs render this search extra challenging due to their insoluble substrates, complex pattern of reaction products and lack of synthetic standards of most oxidized products. Here, we describe a regioselectivity indicator diagram based on the time-course of only 2 HPAEC-PAD signals. The diagram was successfully used to confirm the hypothesis that aromatic surface residues influence the C1/C4 oxidation ratio in Hypocrea jecorina LPMO9A. Consequently, the diagram should become a valuable tool in the search towards better understanding and engineering of regioselectivity in LPMOs. Public Library of Science 2017-05-31 /pmc/articles/PMC5451062/ /pubmed/28562644 http://dx.doi.org/10.1371/journal.pone.0178446 Text en © 2017 Danneels et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Danneels, Barbara Tanghe, Magali Joosten, Henk-Jan Gundinger, Thomas Spadiut, Oliver Stals, Ingeborg Desmet, Tom A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title_full | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title_fullStr | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title_full_unstemmed | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title_short | A quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in HjLPMO9A regioselectivity |
title_sort | quantitative indicator diagram for lytic polysaccharide monooxygenases reveals the role of aromatic surface residues in hjlpmo9a regioselectivity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451062/ https://www.ncbi.nlm.nih.gov/pubmed/28562644 http://dx.doi.org/10.1371/journal.pone.0178446 |
work_keys_str_mv | AT danneelsbarbara aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT tanghemagali aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT joostenhenkjan aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT gundingerthomas aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT spadiutoliver aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT stalsingeborg aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT desmettom aquantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT danneelsbarbara quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT tanghemagali quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT joostenhenkjan quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT gundingerthomas quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT spadiutoliver quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT stalsingeborg quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity AT desmettom quantitativeindicatordiagramforlyticpolysaccharidemonooxygenasesrevealstheroleofaromaticsurfaceresiduesinhjlpmo9aregioselectivity |