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Classification of breast cancer histology images using Convolutional Neural Networks

Breast cancer is one of the main causes of cancer death worldwide. The diagnosis of biopsy tissue with hematoxylin and eosin stained images is non-trivial and specialists often disagree on the final diagnosis. Computer-aided Diagnosis systems contribute to reduce the cost and increase the efficiency...

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Autores principales: Araújo, Teresa, Aresta, Guilherme, Castro, Eduardo, Rouco, José, Aguiar, Paulo, Eloy, Catarina, Polónia, António, Campilho, Aurélio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453426/
https://www.ncbi.nlm.nih.gov/pubmed/28570557
http://dx.doi.org/10.1371/journal.pone.0177544
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author Araújo, Teresa
Aresta, Guilherme
Castro, Eduardo
Rouco, José
Aguiar, Paulo
Eloy, Catarina
Polónia, António
Campilho, Aurélio
author_facet Araújo, Teresa
Aresta, Guilherme
Castro, Eduardo
Rouco, José
Aguiar, Paulo
Eloy, Catarina
Polónia, António
Campilho, Aurélio
author_sort Araújo, Teresa
collection PubMed
description Breast cancer is one of the main causes of cancer death worldwide. The diagnosis of biopsy tissue with hematoxylin and eosin stained images is non-trivial and specialists often disagree on the final diagnosis. Computer-aided Diagnosis systems contribute to reduce the cost and increase the efficiency of this process. Conventional classification approaches rely on feature extraction methods designed for a specific problem based on field-knowledge. To overcome the many difficulties of the feature-based approaches, deep learning methods are becoming important alternatives. A method for the classification of hematoxylin and eosin stained breast biopsy images using Convolutional Neural Networks (CNNs) is proposed. Images are classified in four classes, normal tissue, benign lesion, in situ carcinoma and invasive carcinoma, and in two classes, carcinoma and non-carcinoma. The architecture of the network is designed to retrieve information at different scales, including both nuclei and overall tissue organization. This design allows the extension of the proposed system to whole-slide histology images. The features extracted by the CNN are also used for training a Support Vector Machine classifier. Accuracies of 77.8% for four class and 83.3% for carcinoma/non-carcinoma are achieved. The sensitivity of our method for cancer cases is 95.6%.
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spelling pubmed-54534262017-06-12 Classification of breast cancer histology images using Convolutional Neural Networks Araújo, Teresa Aresta, Guilherme Castro, Eduardo Rouco, José Aguiar, Paulo Eloy, Catarina Polónia, António Campilho, Aurélio PLoS One Research Article Breast cancer is one of the main causes of cancer death worldwide. The diagnosis of biopsy tissue with hematoxylin and eosin stained images is non-trivial and specialists often disagree on the final diagnosis. Computer-aided Diagnosis systems contribute to reduce the cost and increase the efficiency of this process. Conventional classification approaches rely on feature extraction methods designed for a specific problem based on field-knowledge. To overcome the many difficulties of the feature-based approaches, deep learning methods are becoming important alternatives. A method for the classification of hematoxylin and eosin stained breast biopsy images using Convolutional Neural Networks (CNNs) is proposed. Images are classified in four classes, normal tissue, benign lesion, in situ carcinoma and invasive carcinoma, and in two classes, carcinoma and non-carcinoma. The architecture of the network is designed to retrieve information at different scales, including both nuclei and overall tissue organization. This design allows the extension of the proposed system to whole-slide histology images. The features extracted by the CNN are also used for training a Support Vector Machine classifier. Accuracies of 77.8% for four class and 83.3% for carcinoma/non-carcinoma are achieved. The sensitivity of our method for cancer cases is 95.6%. Public Library of Science 2017-06-01 /pmc/articles/PMC5453426/ /pubmed/28570557 http://dx.doi.org/10.1371/journal.pone.0177544 Text en © 2017 Araújo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Araújo, Teresa
Aresta, Guilherme
Castro, Eduardo
Rouco, José
Aguiar, Paulo
Eloy, Catarina
Polónia, António
Campilho, Aurélio
Classification of breast cancer histology images using Convolutional Neural Networks
title Classification of breast cancer histology images using Convolutional Neural Networks
title_full Classification of breast cancer histology images using Convolutional Neural Networks
title_fullStr Classification of breast cancer histology images using Convolutional Neural Networks
title_full_unstemmed Classification of breast cancer histology images using Convolutional Neural Networks
title_short Classification of breast cancer histology images using Convolutional Neural Networks
title_sort classification of breast cancer histology images using convolutional neural networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453426/
https://www.ncbi.nlm.nih.gov/pubmed/28570557
http://dx.doi.org/10.1371/journal.pone.0177544
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