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Discovery of a new hypotrich ciliate from petroleum contaminated soil

Pollution after oil spill represents extreme habitat for survival and is a major concern for loss of species diversity in the affected area. In this study, we investigated soil samples collected from a petrochemical industry, Ulsan, South Korea. The soil was in the phase of recovery from the contami...

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Autores principales: Kumar, Santosh, Bharti, Daizy, Shazib, Shahed Uddin Ahmed, Shin, Mann Kyoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453568/
https://www.ncbi.nlm.nih.gov/pubmed/28570607
http://dx.doi.org/10.1371/journal.pone.0178657
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author Kumar, Santosh
Bharti, Daizy
Shazib, Shahed Uddin Ahmed
Shin, Mann Kyoon
author_facet Kumar, Santosh
Bharti, Daizy
Shazib, Shahed Uddin Ahmed
Shin, Mann Kyoon
author_sort Kumar, Santosh
collection PubMed
description Pollution after oil spill represents extreme habitat for survival and is a major concern for loss of species diversity in the affected area. In this study, we investigated soil samples collected from a petrochemical industry, Ulsan, South Korea. The soil was in the phase of recovery from the contamination of crude oil spill. Detailed investigation, based on morphology, ontogenesis, and molecular phylogenetic methods, resulted in discovery of a novel hypotrich ciliate, i.e., Metasterkiella koreana n. gen., n. sp., which is morphologically characterized by a semirigid body, undulating membranes in Oxytricha pattern, 18 frontal-ventral-transverse cirri with cirrus V/3 placed posteriorly, one right and one left row of marginal cirri, four dorsal kineties, two dorsomarginal rows, and caudal cirri at the end of dorsal kineties 1, 2, and 4. Interestingly, during ontogenesis, formation of three common anlagen for the proter and the opisthe and involvement of cirrus V/3 in anlagen formation was observed. The dorsal ontogenesis was typical of oxytrichids, i.e., simple fragmentation of dorsal kinety 3 and formation of dorsomarginal rows close to the right marginal row. The new species was found to be similar with Sterkiella subtropica, except for some minor differences in morphometry, and at gene level with only one base pair difference. In phylogenetic analyses, based on SSU rRNA gene sequence, M. koreana cluster in a clade away from Sterkiella species, which could be explained by the differences in the morphogenetic pattern between these two genera. It is proposed that S. subtropica probably belongs to Metasterkiella; however, we do not perform changes and wait for the reinvestigation of its morphogenetic pattern.
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spelling pubmed-54535682017-06-12 Discovery of a new hypotrich ciliate from petroleum contaminated soil Kumar, Santosh Bharti, Daizy Shazib, Shahed Uddin Ahmed Shin, Mann Kyoon PLoS One Research Article Pollution after oil spill represents extreme habitat for survival and is a major concern for loss of species diversity in the affected area. In this study, we investigated soil samples collected from a petrochemical industry, Ulsan, South Korea. The soil was in the phase of recovery from the contamination of crude oil spill. Detailed investigation, based on morphology, ontogenesis, and molecular phylogenetic methods, resulted in discovery of a novel hypotrich ciliate, i.e., Metasterkiella koreana n. gen., n. sp., which is morphologically characterized by a semirigid body, undulating membranes in Oxytricha pattern, 18 frontal-ventral-transverse cirri with cirrus V/3 placed posteriorly, one right and one left row of marginal cirri, four dorsal kineties, two dorsomarginal rows, and caudal cirri at the end of dorsal kineties 1, 2, and 4. Interestingly, during ontogenesis, formation of three common anlagen for the proter and the opisthe and involvement of cirrus V/3 in anlagen formation was observed. The dorsal ontogenesis was typical of oxytrichids, i.e., simple fragmentation of dorsal kinety 3 and formation of dorsomarginal rows close to the right marginal row. The new species was found to be similar with Sterkiella subtropica, except for some minor differences in morphometry, and at gene level with only one base pair difference. In phylogenetic analyses, based on SSU rRNA gene sequence, M. koreana cluster in a clade away from Sterkiella species, which could be explained by the differences in the morphogenetic pattern between these two genera. It is proposed that S. subtropica probably belongs to Metasterkiella; however, we do not perform changes and wait for the reinvestigation of its morphogenetic pattern. Public Library of Science 2017-06-01 /pmc/articles/PMC5453568/ /pubmed/28570607 http://dx.doi.org/10.1371/journal.pone.0178657 Text en © 2017 Kumar et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kumar, Santosh
Bharti, Daizy
Shazib, Shahed Uddin Ahmed
Shin, Mann Kyoon
Discovery of a new hypotrich ciliate from petroleum contaminated soil
title Discovery of a new hypotrich ciliate from petroleum contaminated soil
title_full Discovery of a new hypotrich ciliate from petroleum contaminated soil
title_fullStr Discovery of a new hypotrich ciliate from petroleum contaminated soil
title_full_unstemmed Discovery of a new hypotrich ciliate from petroleum contaminated soil
title_short Discovery of a new hypotrich ciliate from petroleum contaminated soil
title_sort discovery of a new hypotrich ciliate from petroleum contaminated soil
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453568/
https://www.ncbi.nlm.nih.gov/pubmed/28570607
http://dx.doi.org/10.1371/journal.pone.0178657
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